View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_44 (Length: 439)

Name: NF15941_low_44
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_44
NF15941_low_44
[»] chr5 (2 HSPs)
chr5 (1-421)||(28386019-28386439)
chr5 (3-421)||(12541369-12541784)
[»] chr2 (3 HSPs)
chr2 (81-421)||(13440962-13441311)
chr2 (81-421)||(13449125-13449474)
chr2 (164-421)||(13462229-13462495)
[»] chr7 (1 HSPs)
chr7 (81-421)||(3416604-3416953)
[»] chr6 (2 HSPs)
chr6 (345-400)||(12482550-12482605)
chr6 (349-393)||(12589289-12589333)
[»] chr8 (2 HSPs)
chr8 (318-408)||(12640568-12640658)
chr8 (224-308)||(12640677-12640761)
[»] chr4 (2 HSPs)
chr4 (339-408)||(48963312-48963381)
chr4 (345-409)||(48959176-48959240)


Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 28386019 - 28386439
Alignment:
Q  1 ctgtatgaagtaaattgtttgttcgaagggaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28386019 ctgtatgaagtaaattgtttgttcgaagagaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggc 28386118  T
Q  101 caagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggttcattgaggagcattgcgcca 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28386119 caagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgcttcattgaggagcattgcgcca 28386218  T
Q  201 ttatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28386219 ttatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaa 28386318  T
Q  301 ggcggagggcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28386319 ggcggagggcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgc 28386418  T
Q  401 tatatcacaaagtggcatcat 421  Q
    |||||||||||||||||||||    
T  28386419 tatatcacaaagtggcatcat 28386439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 12541369 - 12541784
Alignment:
Q  3 gtatgaagtaaattgtttgttcgaagggaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggcca 102  Q
    |||||||| ||||||||| ||| |||||| |  | ||  ||||||||||| ||||| |||||||| || || | ||| || | ||| |||||  | ||||    
T  12541369 gtatgaagcaaattgttttttctaagggattccatgagggagacagcaaaaagagaggatccattgaatgtgaaattgggtacttgtagcttacgagcca 12541468  T
Q  103 agtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggttcattgaggagcattgcgccatt 202  Q
    |||||||| |||||||| | |  || || ||||| |||||||| |||||||| ||| |||| |||||  |||  ||| ||| |||||||||||| |||||    
T  12541469 agtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcaccatt 12541568  T
Q  203 atggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaagg 302  Q
     || || ||||||| ||| || |||||||||||||||| |||||| |||| |||||||||||||||||||||||   ||||||| || || |||||||||    
T  12541569 gtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg 12541668  T
Q  303 cggagggcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgcta 402  Q
      ||||  |   |||| ||||| ||| ||||||| ||   |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12541669 gtgaggatg---gatgggagagatttggtaagggtttcaacattggagggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgcta 12541765  T
Q  403 tatcacaaagtggcatcat 421  Q
    |||||||||| || |||||    
T  12541766 tatcacaaagagggatcat 12541784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 81 - 421
Target Start/End: Original strand, 13440962 - 13441311
Alignment:
Q  81 gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt 180  Q
    ||||| |||||||| || ||||||||||||||||||| | ||||||| || |  || |||||||| |||||||  ||||| | ||||||| |||  | |     
T  13440962 gggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatc 13441061  T
Q  181 cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata 280  Q
    ||| ||||||||||||||||   ||||||||||||| ||| |||| |||||||||||| | |||||| |||| ||||| ||||||||||||||||||  |    
T  13441062 catggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttggga 13441161  T
Q  281 ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca 371  Q
    ||| || || |||||||| | |||||||         || || |||||||||| ||| || |||||||| || ||||||||||||||||||||||||||     
T  13441162 gggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagggagtggtgatgattgtgact 13441261  T
Q  372 tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcat 421  Q
    ||||||||||| |||||||||| ||||||||| |||||||| || |||||    
T  13441262 tgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcat 13441311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 81 - 421
Target Start/End: Original strand, 13449125 - 13449474
Alignment:
Q  81 gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt 180  Q
    ||||| |||| ||| | ||||||||||||| |||||| | | | ||| || |  || ||||||||||||||||  ||||||| |||||||||||  ||||    
T  13449125 gggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt 13449224  T
Q  181 cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata 280  Q
    | || |||||||| |||||| |||||||||||||||||||| | ||||| || || || | |||||| ||||  |||| ||||||| ||||||||||  |    
T  13449225 ctttaaggagcatcgcgccagtatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttggga 13449324  T
Q  281 ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca 371  Q
    |||||| |||||||||||||| || |||         ||| | |||||||||| ||| ||||||||||  || |||| |||||||||||||| ||| ||     
T  13449325 ggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgggagtggtgatgactgttact 13449424  T
Q  372 tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcat 421  Q
    || |||||||| |||||||||| ||||||||| ||| |||| || |||||    
T  13449425 tgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcat 13449474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 164 - 421
Target Start/End: Original strand, 13462229 - 13462495
Alignment:
Q  164 gaaatccccaaccggttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttaggg 263  Q
    ||||||| |||  ||| ||| ||||||||||||||||| ||||||||||||||  ||| | | ||| |||||||| | |||||| |||| ||| | |||     
T  13462229 gaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcagga 13462328  T
Q  264 aggtcgacttgttgataggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggag 354  Q
    ||| | ||||||||  |||||||||| | |||||||| ||| |||         ||||| |||||||||| ||| |||||||||||| | ||||||||||    
T  13462329 aggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattggacgttggagggag 13462428  T
Q  355 tggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcat 421  Q
    ||||||||| |||||| ||||||||||| |||||||||| | ||||||| ||| |||| || |||||    
T  13462429 tggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcat 13462495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 81 - 421
Target Start/End: Complemental strand, 3416953 - 3416604
Alignment:
Q  81 gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt 180  Q
    |||||||||||||| ||||||||||||||| |||||| | |||| || || |  || |||||||| |||||||  || | || ||||||| |||  |||     
T  3416953 gggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtc 3416854  T
Q  181 cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata 280  Q
     || |||||||||||||||||| | |||||||||||||||||   |||| ||||||||||  ||||| |||| ||||| ||||||||| | ||||||| |    
T  3416853 gatggaggagcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaa 3416754  T
Q  281 ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca 371  Q
    ||| || || ||||||||||||||||||         |||||| | || |||| ||| |||||  ||| |||||||||||||||||||||||||||||||    
T  3416753 gggaaagtcgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgaca 3416654  T
Q  372 tgttggccacgtgatgcaaacaaagttgctatatcacaaagtggcatcat 421  Q
    ||||||||| | |||||||||| || |||||||||| |||| || |||||    
T  3416653 tgttggccatgggatgcaaacatagctgctatatcagaaagagggatcat 3416604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 12482605 - 12482550
Alignment:
Q  345 ttggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgc 400  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  12482605 ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgc 12482550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 12589333 - 12589289
Alignment:
Q  349 agggagtggtgatgattgtgacatgttggccacgtgatgcaaaca 393  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||    
T  12589333 agggagtggtggtgattgtgacttgttggccacgggatgcaaaca 12589289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 408
Target Start/End: Complemental strand, 12640658 - 12640568
Alignment:
Q  318 gagagagttttagtaagggattgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcac 408  Q
    ||||||| ||| |||| | | ||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||| |||||| ||||    
T  12640658 gagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcac 12640568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 12640761 - 12640677
Alignment:
Q  224 agggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagg 308  Q
    ||||| ||||||||||| ||  || |||||||| |  || || |||||||||||  ||||||| || ||||||||||||||||||    
T  12640761 agggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggagg 12640677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 48963312 - 48963381
Alignment:
Q  339 tgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcac 408  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||||    
T  48963312 tgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcac 48963381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 48959176 - 48959240
Alignment:
Q  345 ttggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcaca 409  Q
    ||||||||||||||||||||||| || ||||||||| | |||||||||| ||||||||| |||||    
T  48959176 ttggagggagtggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcaca 48959240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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