View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_45 (Length: 438)

Name: NF15941_low_45
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_45
NF15941_low_45
[»] chr4 (13 HSPs)
chr4 (17-425)||(36612684-36613092)
chr4 (137-393)||(35968797-35969053)
chr4 (221-388)||(20211229-20211396)
chr4 (136-393)||(36636290-36636547)
chr4 (136-388)||(36910035-36910287)
chr4 (221-390)||(28125370-28125538)
chr4 (221-390)||(29677047-29677217)
chr4 (288-398)||(36627553-36627663)
chr4 (272-381)||(38862637-38862748)
chr4 (340-388)||(55966197-55966245)
chr4 (51-96)||(35968711-35968756)
chr4 (136-180)||(18364685-18364729)
chr4 (136-180)||(36598196-36598240)
[»] chr5 (2 HSPs)
chr5 (59-371)||(19657708-19658020)
chr5 (59-371)||(19674547-19674859)
[»] chr1 (2 HSPs)
chr1 (142-387)||(42602238-42602481)
chr1 (59-96)||(42602527-42602564)
[»] chr6 (2 HSPs)
chr6 (136-388)||(33839645-33839897)
chr6 (328-393)||(33843560-33843625)
[»] chr8 (1 HSPs)
chr8 (331-386)||(35336425-35336480)
[»] chr3 (2 HSPs)
chr3 (136-184)||(25597390-25597438)
chr3 (136-184)||(25602186-25602234)


Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 36613092 - 36612684
Alignment:
Q  17 acatctcttaaacttggtcctattaaattttctagaacaatctttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36613092 acatctcttaaacttggtcctattaaattttctagaacaatctttccaaaatctttgaatttgccagcattgaccagcttaaatttaaacacatttatgt 36612993  T
Q  117 tttgtggtggcgatgacaattgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccct 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612992 tttgtggtggcgatgacaattgtgttgaaccctcttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccct 36612893  T
Q  217 caggatatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttact 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36612892 caggatatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagtctttgtacctttact 36612793  T
Q  317 tataccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaatatatttttgttgggaaaagcctg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36612792 tataccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgctgcagaaatatatttttgttgggaaaagcctg 36612693  T
Q  417 ctatgcttc 425  Q
    |||||||||    
T  36612692 ctatgcttc 36612684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 393
Target Start/End: Original strand, 35968797 - 35969053
Alignment:
Q  137 tgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacac 236  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || |  | |||   ||   |||||| |||| ||||| ||||||||| |||||||    
T  35968797 tgtgttgaccccttttccgcctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacac 35968896  T
Q  237 tagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatca 336  Q
    | ||  |||||||||||||| | | ||||| | | |||  | ||||| |||| | |||||| |||||||| |||||||||  |||||||  |||| ||||    
T  35968897 ttgtcgatttagctatgcatcataattcatctaatttttcccaaattgagttgtctactcctagtctttgcacctttactattaccggtattcctaatca 35968996  T
Q  337 gagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 393  Q
    || |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  35968997 gaaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgatgcaaaaat 35969053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 20211396 - 20211229
Alignment:
Q  221 atatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttata 320  Q
    ||||||||| ||||||| || | ||||||||||||| |   |||||  ||||||| ||||||| |||||| |  ||||||||||||||||||||||| ||    
T  20211396 atatcaagcaagacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttactttta 20211297  T
Q  321 ccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 388  Q
    |||||  ||||||||||| ||||||||| || |||||||||||||| ||||  |||||||||| ||||    
T  20211296 ccggtattcctgatcagaaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgca 20211229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 393
Target Start/End: Complemental strand, 36636547 - 36636290
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 235  Q
    ||||| ||| |||||||  |||||| ||||||||| |||||||||||||  ||| |||    | ||||||||||||| ||||||||||||||| || ||     
T  36636547 ttgtgctgagccctttttggcctttcccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtgaaacc 36636448  T
Q  236 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 335  Q
    || || |||||    |||| | |   |||| | |||||||  |||||| |||||| | |||| ||||||||||||||||||| ||| |||  ||||| ||    
T  36636447 cttgtcaattttaaaatgcgtaattattcagaagactttgcaaaaattgagttatgtgctccaagtctttgtacctttacttttactggtactcctgttc 36636348  T
Q  336 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 393  Q
    ||| ||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||    
T  36636347 agaaaatatgtgggagtggtctttcttctgtcaaacaagtaaagattaaagcagaaat 36636290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 388
Target Start/End: Original strand, 36910035 - 36910287
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 235  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||  ||| ||||   | | |||||| |||| |||||  |||||||| ||||||    
T  36910035 ttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaatcctcaacatatcaagtgagaca 36910134  T
Q  236 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 335  Q
    || || ||||||||  |||| || | || |  |||||||| |||| |  |||||| | |||| ||||||||||||||||||| ||||||| | | |  ||    
T  36910135 cttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttatctgctccaagtctttgtacctttacttttaccggtgaccttcttc 36910234  T
Q  336 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 388  Q
    ||| ||||| ||||||  |||| |||||| |||||| ||||||||| ||||||    
T  36910235 agaaaatatatgggagcagtctctcttctattaaacaagtaaatatcgatgca 36910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 221 - 390
Target Start/End: Original strand, 28125370 - 28125538
Alignment:
Q  221 atatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttata 320  Q
    ||||||||||||||||| ||   ||||||||||||| |   |||||  ||||||| ||||||| ||| || |  ||||||||||||| ||||||||| ||    
T  28125370 atatcaagcgagacacttgtcgttttagctatgcataatgattcatccgactttgccaaaattgagt-atctggtccgagtctttgttcctttactttta 28125468  T
Q  321 ccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcaga 390  Q
    |||||  ||||||||||| ||||||||| ||  ||||||||||||| ||||  |||||||||| ||||||    
T  28125469 ccggtattcctgatcagaaaatatgtggaagcagtctttcttctgtgaaacatgtaaatattgctgcaga 28125538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 390
Target Start/End: Original strand, 29677047 - 29677217
Alignment:
Q  221 atatcaagcgagacactagtaaatttagctatgcat-gaaagttcatatgactttgacaaaattcagttatttactcc-gagtctttgtacctttactta 318  Q
    ||||||||||||||||| || ||||||| || |||| | |||| |||  |||||||  |||||| |||||| |||||| ||||||||||||| ||||||     
T  29677047 atatcaagcgagacacttgtcaatttagatacgcatagtaagt-catccgactttgcaaaaattgagttatctactcctgagtctttgtacccttacttt 29677145  T
Q  319 taccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcaga 390  Q
     || |||  ||||||||||  ||||||||| || |||||||||||||| ||||  |||||||||| ||||||    
T  29677146 cactggtagtcctgatcagcaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgcaga 29677217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 36627663 - 36627553
Alignment:
Q  288 tatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgc 387  Q
    |||||||||| ||||||||||||||||  | |||||||   |||  ||| | |||||||||||| ||||||||||||||||||| ||||||||||| |||    
T  36627663 tatttactccaagtctttgtacctttaagtttaccggtataccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgc 36627564  T
Q  388 agaaatatatt 398  Q
    || ||| ||||    
T  36627563 agtaatgtatt 36627553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 38862748 - 38862637
Alignment:
Q  272 tttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtg--ggagtggtctttcttctgttaa 369  Q
    ||||| |||||| || ||| |||||| ||||| ||||||||||||| || ||||  |||| |||| | ||||||||  ||||||||||||||||||||||    
T  38862748 tttgagaaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttcttctgttaa 38862649  T
Q  370 actagtaaatat 381  Q
    || |||||||||    
T  38862648 acgagtaaatat 38862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 55966245 - 55966197
Alignment:
Q  340 aatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 388  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  55966245 aatatgtgggagtgctctttcttctgttaaacaagtaaatattggtgca 55966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 35968711 - 35968756
Alignment:
Q  51 gaacaatctttccaaaatctttgaattttccagcattgaccagctt 96  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  35968711 gaacaatatttccaaaatatttgaatttgccagcattgaccagctt 35968756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 18364685 - 18364729
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggt 180  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  18364685 ttgtgctgagcccttttccgcctttcccaagttgaatagtttggt 18364729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 36598240 - 36598196
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggt 180  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  36598240 ttgtgctgagcccttttccgcctttcccaagttgaatagtttggt 36598196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 371
Target Start/End: Complemental strand, 19658020 - 19657708
Alignment:
Q  59 tttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaattgtgttgaacccttttccgcct 158  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| ||||   |||||| ||| || | || ||  ||||||||| ||| || |||| || ||    
T  19658020 tttccaaaatctttgaatttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19657921  T
Q  159 ttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagtaaatttagctatgcatga 258  Q
    ||||||||||||||||||||||||||||| | |||   ||| |||||||| ||||||| | ||||||||| |||||||| ||||||||| |||||||  |    
T  19657920 ttaccaagttgaatagtttggtcattgattgttgtagtatttgggatgcaaaaaccctaaagatatcaagtgagacacttgtaaatttaactatgcacaa 19657821  T
Q  259 aagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctt 358  Q
    || |  || | || ||||||||||| |||||| |||| | ||||||||||||||||||||||||| |  |  |  || |||||||||||||| |||||||    
T  19657820 aaatatattttacattgacaaaattgagttatctacttcaagtctttgtacctttacttataccgattgttttattccgagaatatgtgggactggtctt 19657721  T
Q  359 tcttctgttaaac 371  Q
     ||||||||||||    
T  19657720 gcttctgttaaac 19657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 59 - 371
Target Start/End: Complemental strand, 19674859 - 19674547
Alignment:
Q  59 tttccaaaatctttgaattttccagcattgaccagcttaaatttaaacacatttatgttttgtggtggcgatgacaattgtgttgaacccttttccgcct 158  Q
    |||||||||||||||| ||| ||| ||||||||| ||||||| ||||   |||||| ||| || | || ||  ||||||||| ||| || |||| || ||    
T  19674859 tttccaaaatctttgagtttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19674760  T
Q  159 ttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagtaaatttagctatgcatga 258  Q
    ||||||||||||||||||||||||||||| | |||   ||| |||||||| ||||||| | ||||||||| |||||||| ||||||||| |||||||  |    
T  19674759 ttaccaagttgaatagtttggtcattgattgttgtagtatttgggatgcaaaaaccctaaagatatcaagtgagacacttgtaaatttaactatgcacaa 19674660  T
Q  259 aagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctt 358  Q
    || |  || | || ||||||||||| |||||| |||| | ||||||||||||||||||||||||| |  |  |  || |||||||||||||| |||||||    
T  19674659 aaatatattttacattgacaaaattgagttatctacttcaagtctttgtacctttacttataccgattgttttattccgagaatatgtgggactggtctt 19674560  T
Q  359 tcttctgttaaac 371  Q
     ||||||||||||    
T  19674559 gcttctgttaaac 19674547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 142 - 387
Target Start/End: Complemental strand, 42602481 - 42602238
Alignment:
Q  142 tgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagacactagta 241  Q
    |||||||||||   ||||||||| |||||||||||||||||||   || ||| |  | |  |||||||||| ||||||||||||||| |||||||| ||     
T  42602481 tgaaccctttttgacctttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtc 42602382  T
Q  242 aatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatcagagaa 341  Q
    ||||||||||||||| | | ||||| |  ||||  ||||||  |||||| | |||| || |||||| | ||||||   | |||   || |||||||| ||    
T  42602381 aatttagctatgcataatatttcatcttcctttaccaaaatcgagttatctgctccaagcctttgtgcatttactatcaacggcagtcttgatcagaaaa 42602282  T
Q  342 tatgtgggagtggtctttcttctgttaaactagtaaatattgatgc 387  Q
    |||||||||| ||||  |||||||||||||  ||||||||||||||    
T  42602281 tatgtgggagcggtc--tcttctgttaaacatgtaaatattgatgc 42602238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 42602564 - 42602527
Alignment:
Q  59 tttccaaaatctttgaattttccagcattgaccagctt 96  Q
    |||||||||||||||||||| || ||||||||||||||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagctt 42602527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 388
Target Start/End: Complemental strand, 33839897 - 33839645
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 235  Q
    ||||| ||| |||||||| |||||||||||||||||||| ||| |||||  | | |||    ||| ||||||||||| |||| |||||||||| ||||||    
T  33839897 ttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagaca 33839798  T
Q  236 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactccgagtctttgtacctttacttataccggtcatcctgatc 335  Q
    ||||  ||||||  | || || | | || ||   |||||||||||||  || ||  | |||||||||| || |||||||||| |   |||  |||| | |    
T  33839797 ctagacaatttatatttgtataagaatttattcaactttgacaaaatcgagctagctgctccgagtctctgcacctttactttttatggtactcctaaac 33839698  T
Q  336 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgca 388  Q
    ||| |||||||||||||||  ||||||| ||||||  |||||| |||||||||    
T  33839697 agaaaatatgtgggagtggattttcttccgttaaagaagtaaacattgatgca 33839645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 33843625 - 33843560
Alignment:
Q  328 tcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatgcagaaat 393  Q
    ||||||||||| ||||| |||||||||  ||||||||||||||  |||||| ||||||||| ||||    
T  33843625 tcctgatcagaaaatatatgggagtggattttcttctgttaaagaagtaaacattgatgcaaaaat 33843560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 35336425 - 35336480
Alignment:
Q  331 tgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgatg 386  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  35336425 tgatcagaaaatatgtgggagcggtctttcttctgttaaacaagtaaacattgatg 35336480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 25597390 - 25597438
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcatt 184  Q
    ||||||||| ||||||| ||||||||  | |||||||||||||||||||    
T  25597390 ttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcatt 25597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 25602186 - 25602234
Alignment:
Q  136 ttgtgttgaacccttttccgcctttaccaagttgaatagtttggtcatt 184  Q
    |||||||||||||||||  |||||||  | |||||||||||||||||||    
T  25602186 ttgtgttgaaccctttttggcctttaaaatgttgaatagtttggtcatt 25602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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