View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_47 (Length: 435)
Name: NF15941_low_47
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_47 |
 |  |
|
| [»] scaffold0245 (1 HSPs) |
 |  |  |
|
| [»] scaffold0229 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 55380607 - 55380191
Alignment:
| Q |
1 |
agtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaatcgtttaaaaagttttgtatatcatcgttattatgttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
55380607 |
agtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaattgtttaaaaagttttgtacatcatcgttattatgttagt |
55380508 |
T |
 |
| Q |
101 |
aataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaactgaaagggaaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55380507 |
aataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaactgaaagggaaaaag |
55380408 |
T |
 |
| Q |
201 |
gagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttctatggcatcagttttgtttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55380407 |
gagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtttgttagttttctatggcatcagttttgtttttc |
55380308 |
T |
 |
| Q |
301 |
tgctgattaatgtaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatccaataatctcccaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55380307 |
tgctgattaatgtaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatccaataatctcccaaat |
55380208 |
T |
 |
| Q |
401 |
accatcgaactatcttc |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
55380207 |
accatcgaactatcttc |
55380191 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 25184723 - 25184809
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
25184723 |
ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct |
25184809 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 42428432 - 42428474
Alignment:
| Q |
233 |
ttgggagagattaggctctctaattcctagaggtttgttagttt |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
42428432 |
ttgggagagactaggctctctaattcctagagg-ttgttagttt |
42428474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 35390490 - 35390536
Alignment:
| Q |
226 |
ggttggtttgggagagattaggctctctaattcctagaggtttgtta |
272 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||||| |||| |
|
|
| T |
35390490 |
ggttggtttgggagagactaggctctctaactcctaaaggttggtta |
35390536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 46258186 - 46258106
Alignment:
| Q |
186 |
ctgaaagggaaaagggagggcatt-agttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt |
267 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| | |||||||| ||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
46258186 |
ctgaaagggaaaagggagggcattcggttgttttatgt-ttggttgg-ttgtaagagactaggctctctaatttctagaggtt |
46258106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 36241274 - 36241188
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36241274 |
ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct |
36241188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 39367583 - 39367707
Alignment:
| Q |
141 |
gtaactgctatgttactgctgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggtt-ggtttggg |
237 |
Q |
| |
|
||||||||| ||| || ||| |||| ||||| ||||||| ||| | |||||||||||||||||||| | ||| | |||| |||||||||| ||||| || |
|
|
| T |
39367583 |
gtaactgctttgtaaccgctttaggaagtcataattataaatatatgctgaaagggaaaagggaggggactaggtgttttgtatgttggtttggttttgg |
39367682 |
T |
 |
| Q |
238 |
agagattaggctctctaattcctag |
262 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
39367683 |
agagattaggctctataattcctag |
39367707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 17166054 - 17165968
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
17166054 |
ggaaaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct |
17165968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 41483140 - 41483203
Alignment:
| Q |
351 |
aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc |
414 |
Q |
| |
|
|||||||||||| || |||| |||| ||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
41483140 |
aataatacatcacgtgcattcccttattattatgcaataatctcccaaataccatagaattatc |
41483203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
| Q |
229 |
tggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
29250494 |
tggtttgggagagactaggctctctgattcctagagg |
29250530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 39814524 - 39814598
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt |
267 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39814524 |
ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt |
39814598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 12987568 - 12987462
Alignment:
| Q |
162 |
taggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcc |
259 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||| || ||||||| | |||||| ||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
12987568 |
taggtagtcagaattataaatatattctgatagggaaagagg-gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcc |
12987470 |
T |
 |
| Q |
260 |
tagaggtt |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
12987469 |
tagaggtt |
12987462 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 12987427 - 12987364
Alignment:
| Q |
351 |
aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc |
414 |
Q |
| |
|
|||||||||||| || |||| |||| ||||||| | ||||||||||||||||||| ||| |||| |
|
|
| T |
12987427 |
aataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatc |
12987364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 5721844 - 5721918
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt |
267 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5721844 |
ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt |
5721918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 11359527 - 11359441
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
11359527 |
ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct |
11359441 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 52975799 - 52975690
Alignment:
| Q |
160 |
tgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattag-ttattttatatgtt-ggttggtttgggagagattaggctctctaa |
255 |
Q |
| |
|
|||||| ||| ||||| ||| ||||| |||||||||||||||||||||||| | ||||||| |||||| |||| ||| |||||||| |||||||||||| |
|
|
| T |
52975799 |
tgtaggaagttagaataataaataaaggctgaaagggaaaagggagggcattcggttatttt-tatgtttggttagtt-gggagagactaggctctctaa |
52975702 |
T |
 |
| Q |
256 |
ttcctagaggtt |
267 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52975701 |
ttcctagaggtt |
52975690 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 35764138 - 35764188
Alignment:
| Q |
227 |
gttggtttgggagagattaggctctctaattcctagaggtttgttagtttt |
277 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
35764138 |
gttggtttgggagagactagactctataattcctaaaggtttgttagtttt |
35764188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
| Q |
229 |
tggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1280528 |
tggtttgggagagactaggctctctgattcctagagg |
1280564 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 832044 - 832108
Alignment:
| Q |
213 |
tattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt |
277 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
832044 |
tattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagtttt |
832108 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 10857394 - 10857322
Alignment:
| Q |
195 |
aaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt |
267 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10857394 |
aaaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggtt |
10857322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 832139 - 832248
Alignment:
| Q |
307 |
ttaatgtaaccacctctattggcagaataaccatagtgtgtatc---aataatacatcatgtacatttccttgttattatccaataatctcccaaatacc |
403 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| || || ||| |||||||||| | ||||||| |||| |||||||||||||||| |||||||| | |
|
|
| T |
832139 |
ttaatgtaaccatctctgttggcagaataaccacagaatgcatcattaataatacat-acgtacattcccttattattatccaataatcccccaaatatc |
832237 |
T |
 |
| Q |
404 |
atcgaactatc |
414 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
832238 |
atagaattatc |
832248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 11840829 - 11840951
Alignment:
| Q |
157 |
tgctgtaggtagtcagaattatacataaac--tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctcta |
254 |
Q |
| |
|
|||||||||||||| |||||||| ||| | |||||| |||||||||||||| | | |||||| ||| | | ||||||||||||||| |||| |||||| |
|
|
| T |
11840829 |
tgctgtaggtagtctgaattataaatataggttgaaagagaaaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctcta |
11840928 |
T |
 |
| Q |
255 |
attcctagaggtttgttagtttt |
277 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
11840929 |
attcctagaggtttgttaatttt |
11840951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 25542492 - 25542408
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt |
277 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| |||||||||||||| || |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
25542492 |
ggaaaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgctagaggttggttactttt |
25542408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 35690 - 35612
Alignment:
| Q |
187 |
tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
||||||||||||||||| || |||| |||||| || |||||||||||||||| ||| || | |||||||||||||||| |
|
|
| T |
35690 |
tgaaagggaaaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg |
35612 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 40868870 - 40868928
Alignment:
| Q |
208 |
ttagttattttatatgttggtt-ggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
||||||||||| |||||| ||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
40868870 |
ttagttattttttatgttagtttggtttgagagagaataggctctctaattcctagagg |
40868928 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 48879652 - 48879608
Alignment:
| Q |
232 |
tttgggagagattaggctctctaattcctagaggtttgttagttt |
276 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
48879652 |
tttgggagagactaggctctctaagtcctagaggtttgtttgttt |
48879608 |
T |
 |
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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 18691028 - 18691114
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18691028 |
ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct |
18691114 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 33215270 - 33215184
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
33215270 |
ggaaaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttct |
33215184 |
T |
 |
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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 41108969 - 41109055
Alignment:
| Q |
193 |
ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct |
279 |
Q |
| |
|
||||| |||| |||||| | |||||| ||||| ||||||||||||||||| | |||||||||||||||||||||| |||| |||||| |
|
|
| T |
41108969 |
ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttct |
41109055 |
T |
 |
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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 22726489 - 22726534
Alignment:
| Q |
220 |
tatgttggtt-ggtttgggagagattaggctctctaattcctagag |
264 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22726489 |
tatgttggtttggtttgggagagactaggctctctaattcctagag |
22726534 |
T |
 |
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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 6206 - 6242
Alignment:
| Q |
229 |
tggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6206 |
tggtttgggagagactaggctctctgattcctagagg |
6242 |
T |
 |
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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 6536 - 6572
Alignment:
| Q |
229 |
tggtttgggagagattaggctctctaattcctagagg |
265 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6536 |
tggtttgggagagactaggctctctgattcctagagg |
6572 |
T |
 |
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