View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_47 (Length: 435)

Name: NF15941_low_47
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_47
NF15941_low_47
[»] chr3 (5 HSPs)
chr3 (1-417)||(55380191-55380607)
chr3 (193-279)||(25184723-25184809)
chr3 (233-276)||(42428432-42428474)
chr3 (226-272)||(35390490-35390536)
chr3 (186-267)||(46258106-46258186)
[»] chr8 (2 HSPs)
chr8 (193-279)||(36241188-36241274)
chr8 (141-262)||(39367583-39367707)
[»] chr7 (3 HSPs)
chr7 (193-279)||(17165968-17166054)
chr7 (351-414)||(41483140-41483203)
chr7 (229-265)||(29250494-29250530)
[»] chr2 (3 HSPs)
chr2 (193-267)||(39814524-39814598)
chr2 (162-267)||(12987462-12987568)
chr2 (351-414)||(12987364-12987427)
[»] chr1 (5 HSPs)
chr1 (193-267)||(5721844-5721918)
chr1 (193-279)||(11359441-11359527)
chr1 (160-267)||(52975690-52975799)
chr1 (227-277)||(35764138-35764188)
chr1 (229-265)||(1280528-1280564)
[»] chr6 (3 HSPs)
chr6 (213-277)||(832044-832108)
chr6 (195-267)||(10857322-10857394)
chr6 (307-414)||(832139-832248)
[»] chr4 (5 HSPs)
chr4 (157-277)||(11840829-11840951)
chr4 (193-277)||(25542408-25542492)
chr4 (187-265)||(35612-35690)
chr4 (208-265)||(40868870-40868928)
chr4 (232-276)||(48879608-48879652)
[»] chr5 (4 HSPs)
chr5 (193-279)||(18691028-18691114)
chr5 (193-279)||(33215184-33215270)
chr5 (193-279)||(41108969-41109055)
chr5 (220-264)||(22726489-22726534)
[»] scaffold0245 (1 HSPs)
scaffold0245 (229-265)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (229-265)||(6536-6572)


Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 55380607 - 55380191
Alignment:
1 agtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaatcgtttaaaaagttttgtatatcatcgttattatgttagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
55380607 agtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaattgtttaaaaagttttgtacatcatcgttattatgttagt 55380508  T
101 aataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaactgaaagggaaaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
55380507 aataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaactgaaagggaaaaag 55380408  T
201 gagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttctatggcatcagttttgtttttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55380407 gagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtttgttagttttctatggcatcagttttgtttttc 55380308  T
301 tgctgattaatgtaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatccaataatctcccaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55380307 tgctgattaatgtaaccacctctattggcagaataaccatagtgtgtatcaataatacatcatgtacatttccttgttattatccaataatctcccaaat 55380208  T
401 accatcgaactatcttc 417  Q
    |||||||||||||||||    
55380207 accatcgaactatcttc 55380191  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 25184723 - 25184809
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
25184723 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 25184809  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 42428432 - 42428474
Alignment:
233 ttgggagagattaggctctctaattcctagaggtttgttagttt 276  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
42428432 ttgggagagactaggctctctaattcctagagg-ttgttagttt 42428474  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 35390490 - 35390536
Alignment:
226 ggttggtttgggagagattaggctctctaattcctagaggtttgtta 272  Q
    ||||||||||||||||| |||||||||||| ||||| ||||| ||||    
35390490 ggttggtttgggagagactaggctctctaactcctaaaggttggtta 35390536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 46258186 - 46258106
Alignment:
186 ctgaaagggaaaagggagggcatt-agttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 267  Q
    ||||||||||||||||||||||||  ||| |||||| | |||||||| |||  ||||| |||||||||||||| |||||||||    
46258186 ctgaaagggaaaagggagggcattcggttgttttatgt-ttggttgg-ttgtaagagactaggctctctaatttctagaggtt 46258106  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 36241274 - 36241188
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
36241274 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 36241188  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 39367583 - 39367707
Alignment:
141 gtaactgctatgttactgctgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggtt-ggtttggg 237  Q
    ||||||||| ||| || ||| |||| ||||| ||||||| ||| |  |||||||||||||||||||| | ||| | |||| |||||||||| ||||| ||    
39367583 gtaactgctttgtaaccgctttaggaagtcataattataaatatatgctgaaagggaaaagggaggggactaggtgttttgtatgttggtttggttttgg 39367682  T
238 agagattaggctctctaattcctag 262  Q
    |||||||||||||| ||||||||||    
39367683 agagattaggctctataattcctag 39367707  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 17166054 - 17165968
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
17166054 ggaaaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 17165968  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 41483140 - 41483203
Alignment:
351 aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc 414  Q
    |||||||||||| || |||| |||| ||||||| ||||||||||||||||||||| ||| ||||    
41483140 aataatacatcacgtgcattcccttattattatgcaataatctcccaaataccatagaattatc 41483203  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
229 tggtttgggagagattaggctctctaattcctagagg 265  Q
    |||||||||||||| |||||||||| |||||||||||    
29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 39814524 - 39814598
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 267  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
39814524 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 39814598  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 12987568 - 12987462
Alignment:
162 taggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcc 259  Q
    |||||||||||||||||| ||| |  |||| |||||||  || ||||||| | |||||| ||||| ||||||||||||||||| |||||||||| |||||    
12987568 taggtagtcagaattataaatatattctgatagggaaagagg-gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcc 12987470  T
260 tagaggtt 267  Q
    ||||||||    
12987469 tagaggtt 12987462  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 12987427 - 12987364
Alignment:
351 aataatacatcatgtacatttccttgttattatccaataatctcccaaataccatcgaactatc 414  Q
    |||||||||||| || |||| |||| ||||||| | ||||||||||||||||||| ||| ||||    
12987427 aataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatc 12987364  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 5721844 - 5721918
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 267  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
5721844 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 5721918  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 11359527 - 11359441
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
11359527 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 11359441  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 52975799 - 52975690
Alignment:
160 tgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattag-ttattttatatgtt-ggttggtttgggagagattaggctctctaa 255  Q
    |||||| ||| ||||| ||| |||||  |||||||||||||||||||||||| | ||||||| |||||| |||| ||| |||||||| ||||||||||||    
52975799 tgtaggaagttagaataataaataaaggctgaaagggaaaagggagggcattcggttatttt-tatgtttggttagtt-gggagagactaggctctctaa 52975702  T
256 ttcctagaggtt 267  Q
    ||||||||||||    
52975701 ttcctagaggtt 52975690  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 35764138 - 35764188
Alignment:
227 gttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 277  Q
    |||||||||||||||| ||| |||| ||||||||| |||||||||||||||    
35764138 gttggtttgggagagactagactctataattcctaaaggtttgttagtttt 35764188  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
229 tggtttgggagagattaggctctctaattcctagagg 265  Q
    |||||||||||||| |||||||||| |||||||||||    
1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 832044 - 832108
Alignment:
213 tattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 277  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
832044 tattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagtttt 832108  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 10857394 - 10857322
Alignment:
195 aaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 267  Q
    |||||||||||||||   |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
10857394 aaaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggtt 10857322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 832139 - 832248
Alignment:
307 ttaatgtaaccacctctattggcagaataaccatagtgtgtatc---aataatacatcatgtacatttccttgttattatccaataatctcccaaatacc 403  Q
    |||||||||||| |||| ||||||||||||||| ||  || |||   |||||||||| | ||||||| |||| |||||||||||||||| |||||||| |    
832139 ttaatgtaaccatctctgttggcagaataaccacagaatgcatcattaataatacat-acgtacattcccttattattatccaataatcccccaaatatc 832237  T
404 atcgaactatc 414  Q
    || ||| ||||    
832238 atagaattatc 832248  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 11840829 - 11840951
Alignment:
157 tgctgtaggtagtcagaattatacataaac--tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctcta 254  Q
    |||||||||||||| |||||||| ||| |   |||||| |||||||||||||| | | |||||| ||| | | ||||||||||||||| |||| ||||||    
11840829 tgctgtaggtagtctgaattataaatataggttgaaagagaaaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctcta 11840928  T
255 attcctagaggtttgttagtttt 277  Q
    |||||||||||||||||| ||||    
11840929 attcctagaggtttgttaatttt 11840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 25542492 - 25542408
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 277  Q
    ||||||||||||||||| | |||||| ||||| |||||||||||||| || |||||||||||||| ||||||||| |||| ||||    
25542492 ggaaaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgctagaggttggttactttt 25542408  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 35690 - 35612
Alignment:
187 tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagagg 265  Q
    ||||||||||||||||| || |||| |||||| || |||||||||||||||| ||| ||  | ||||||||||||||||    
35690 tgaaagggaaaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg 35612  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 40868870 - 40868928
Alignment:
208 ttagttattttatatgttggtt-ggtttgggagagattaggctctctaattcctagagg 265  Q
    ||||||||||| |||||| ||| |||||| |||||| ||||||||||||||||||||||    
40868870 ttagttattttttatgttagtttggtttgagagagaataggctctctaattcctagagg 40868928  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 48879652 - 48879608
Alignment:
232 tttgggagagattaggctctctaattcctagaggtttgttagttt 276  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||    
48879652 tttgggagagactaggctctctaagtcctagaggtttgtttgttt 48879608  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 18691028 - 18691114
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
18691028 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 18691114  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 33215270 - 33215184
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||    
33215270 ggaaaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttct 33215184  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 41108969 - 41109055
Alignment:
193 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 279  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| | |||||||||||||||||||||| |||| ||||||    
41108969 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttct 41109055  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 22726489 - 22726534
Alignment:
220 tatgttggtt-ggtttgggagagattaggctctctaattcctagag 264  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
22726489 tatgttggtttggtttgggagagactaggctctctaattcctagag 22726534  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 6206 - 6242
Alignment:
229 tggtttgggagagattaggctctctaattcctagagg 265  Q
    |||||||||||||| |||||||||| |||||||||||    
6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 6536 - 6572
Alignment:
229 tggtttgggagagattaggctctctaattcctagagg 265  Q
    |||||||||||||| |||||||||| |||||||||||    
6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

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