View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_49 (Length: 434)
Name: NF15941_low_49
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 7863517 - 7863916
Alignment:
| Q |
16 |
aatatgtggttctatataagcagccaaactagggcttataggtaactttgccaatttttgagatacacaaaaggnnnnnnngtttggatttttcctgagg |
115 |
Q |
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| T |
7863517 |
aatatgtggttctatataagcaaccaaactagggcttataggtaactttgccaatttttgagatacacaaaaggaaaaaaagtttggatttttcctgagg |
7863616 |
T |
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| Q |
116 |
taaaaaagtggaaactttagcttgtaaataaactttggtgacacaatgaaacccttttccattgataaaggtggaagaccttgaaagggttgaatgtaaa |
215 |
Q |
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| T |
7863617 |
taaaaaagtggaaactttagcttgtaaataaactttggtgacacaatgaaacccttttccattgataaaggtggaagaccttgaaagggttgaatgtaaa |
7863716 |
T |
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| Q |
216 |
gcttatacaagccttgaacatgaagttctatggttgcttctttttcttcaaaactgttttgtgagatttctggggttcctatggtcatggtgtgagcata |
315 |
Q |
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| T |
7863717 |
gcttatacaagccttgaacatgaagttctatggttgcttctttttcttcaaaactgttttgtgagatttctggggttcctatggtcatggtgtgagcata |
7863816 |
T |
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| Q |
316 |
gtttttgcttggtatgttgaagtttgattgagaagagggaaatggaaaagggtttgtagggttggatgaagaagacattggttggaagtggaggaggaaa |
415 |
Q |
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| T |
7863817 |
gtttttgcttggtatgttgaagtttgattgagaagagggaaatggaaaagggtttgtagggttggatgaagaagacattggttggaagtggaagaggaaa |
7863916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 227 - 395
Target Start/End: Complemental strand, 7836485 - 7836317
Alignment:
| Q |
227 |
ccttgaacatgaagttctatggttgcttctttttcttcaaaactgttttgtgagatttctggggttcctatggtcatggtgtgagcatagtttttgcttg |
326 |
Q |
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| T |
7836485 |
ccttgaacatgaagatctattgttgctactttttcactagtgatgtttgttgacatttctggggttcctatgctcatagtgtggctatagtttttgcttg |
7836386 |
T |
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| Q |
327 |
gtatgttgaagtttgattgagaagagggaaatggaaaagggtttgtagggttggatgaagaagacattg |
395 |
Q |
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| T |
7836385 |
gtatcttatggtttgattcagaaaagtaaaatgggaaaaggtttgtagggttggatgatgatgacattg |
7836317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 7836673 - 7836600
Alignment:
| Q |
16 |
aatatgtggttctatataagcagccaaactagggcttataggtaactttgccaatttttgagatacacaaaagg |
89 |
Q |
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| T |
7836673 |
aatatgtggttctatatacgcagccaaaccagaacttatgggtaatttttccaatttttgagacacacaaaagg |
7836600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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