View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_52 (Length: 429)
Name: NF15941_low_52
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 51960028 - 51960431
Alignment:
| Q |
20 |
tgactgacgccaaatgatcaactcactagagagaagaaagtataagtattactatatttttaagtgtttatgtaagattccactttttcgtggtacaaac |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960028 |
tgactgacgccaaatgataaactcactagagagaagaaagtataagtattactgtatttttaagtgtttatgtaagattccactttttcgtggtacaaat |
51960127 |
T |
|
| Q |
120 |
aagaaggaaatacaatgaaggagactagaactaggactacattatcttaaaactattttcgttttcatattcattcttggtgacgattgca----ctaat |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
51960128 |
aagaaggaaatacaatgaaggagactatgactaggactacattatcttaaaactattttcgttttcatattcattcttggtgacggttgcattcactaat |
51960227 |
T |
|
| Q |
216 |
actttacttataacattgatatattctaagaaactaaccaatgatttgtcatactggaactatctaaatccttctagaaggaggtgaatcatggtctaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
51960228 |
actttacttataacattgatatattctaagaaactaatcaatgatttgtcatactgaaactatctagatccttctagaaggaggtgatgcatggtctaat |
51960327 |
T |
|
| Q |
316 |
aggattcatagtctctaagtcacttgagccaaaatatatttttcttgggctcatgggtcttgacgatttacttactacattagactcaattctctttccc |
415 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960328 |
aggattcatagtctctaagtcacttgagccgaaatatatttttcttgggctcatgggtcttgacgatttacttactacattagactcaattctctttccc |
51960427 |
T |
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| Q |
416 |
tttg |
419 |
Q |
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|||| |
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| T |
51960428 |
tttg |
51960431 |
T |
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