View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_54 (Length: 425)

Name: NF15941_low_54
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_54
NF15941_low_54
[»] chr6 (9 HSPs)
chr6 (12-407)||(1193142-1193539)
chr6 (182-360)||(1237390-1237566)
chr6 (182-392)||(1182207-1182412)
chr6 (274-399)||(896979-897104)
chr6 (12-156)||(1237201-1237343)
chr6 (12-141)||(1182433-1182561)
chr6 (257-312)||(793863-793918)
chr6 (12-66)||(897197-897250)
chr6 (246-306)||(896463-896523)
[»] chr4 (2 HSPs)
chr4 (202-379)||(10203758-10203935)
chr4 (12-78)||(12857192-12857257)
[»] scaffold0302 (1 HSPs)
scaffold0302 (12-78)||(19729-19794)
[»] chr7 (1 HSPs)
chr7 (22-78)||(20257183-20257238)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 1193539 - 1193142
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacctaataatactaacataactacctattaggatat 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  1193539 tcatcacctaataacacaccagaatac-tacctataacaaatcttaggcctaaaaacattcataacctagtaatactaacataactacctataaggatat 1193441  T
Q  112 caatgactccatcatctgatccaaaacccccattttaagtttgatnnnnnnnnctccaaaactccaaaacaacaa---tatcctaagtactcaatatgcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||   ||||||||||||||||||||||    
T  1193440 caatgactccatcatctgatccaaaacccccattttaagtttgataaaaaaaactccaaaactccaaaacaacaacaatatcctaagtactcaatatgcc 1193341  T
Q  209 atacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1193340 atacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagagagc 1193241  T
Q  309 aagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtattttataagtgttggaacaaaatgcttgggacttgg 407  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  1193240 aagtaaaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtaatttataagtgttggaacaaaatacttgggacttgg 1193142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 360
Target Start/End: Original strand, 1237390 - 1237566
Alignment:
Q  182 aacaatatcctaagtactcaatatgccatacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacatt 281  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||||| || ||||| |  ||||||||    
T  1237390 aacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctatcact--atcacatt 1237487  T
Q  282 ttcttaaccacatactcattagagagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggc 360  Q
    |||||||||||||||||||||||| ||||||       |||||||||| ||||| |||| || ||||||||||||||||    
T  1237488 ttcttaaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggc 1237566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 392
Target Start/End: Complemental strand, 1182412 - 1182207
Alignment:
Q  182 aacaatatcctaagtactcaatatgccatacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacatt 281  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||| |  |||||||||||| | ||         ||||||||||||||| || ||||||||    
T  1182412 aacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataatacttatt--------agagagcacttatcactttatcacatt 1182321  T
Q  282 ttcttaaccacatactcattag---agagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtattttata 378  Q
    |||||||||||||| |||||||   |||||||||       |||||||||| ||||| |||| || || |||||||||||||||| ||| ||||||||||    
T  1182320 ttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaataaagaaggcacagtacggtattttata 1182221  T
Q  379 agtgttggaacaaa 392  Q
    ||||||||||||||    
T  1182220 agtgttggaacaaa 1182207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 897104 - 896979
Alignment:
Q  274 atcacattttcttaaccacatactcattagagagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtatt 373  Q
    |||||||||||||||||||||||||||||||||||||||       |||| ||||| ||||| |||| || |||||| |||||||||||| |||||| ||    
T  897104 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt 897005  T
Q  374 ttataagtgttggaacaaaatgcttg 399  Q
    ||||||||||||||||||||| ||||    
T  897004 ttataagtgttggaacaaaatacttg 896979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 1237201 - 1237343
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacctaataatactaacataactacctattaggatat 111  Q
    |||||||||||||| ||||||||  || |||| |||||||||||||||| |||||||| |||  ||||| |||| |||||||| ||||||||  ||||||    
T  1237201 tcatcacctaataaaacaccagagcac-taccaataacaaatcttaggcataaaaacactcaccacctagtaattctaacatagctacctatagggatat 1237299  T
Q  112 caatgactccatcatctgatccaaaacccccattttaagtttgat 156  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||    
T  1237300 caaggactccatcatctgatccaaaa-ccccattataagtttgat 1237343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 1182561 - 1182433
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacctaataatactaacataactacctattaggatat 111  Q
    |||| ||||||||||||||||||| || || | ||| ||||||||||||||||||||| |||| ||||| |||||||||||| || |||||  |||||||    
T  1182561 tcattacctaataacacaccagaacac-taacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatat 1182463  T
Q  112 caatgactccatcatctgatccaaaacccc 141  Q
    ||| |||||||| |||||||||||||||||    
T  1182462 caaggactccattatctgatccaaaacccc 1182433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 793863 - 793918
Alignment:
Q  257 agagcacttatcatttcatcacattttcttaaccacatactcattagagagcaagt 312  Q
    ||||||||||||| || |||||||||||||||||||||| |||||| | |||||||    
T  793863 agagcacttatcactttatcacattttcttaaccacatattcattaaaaagcaagt 793918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 897250 - 897197
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaa 66  Q
    |||||||||||||||||||||||  || |||| ||||||||||||||||||||||    
T  897250 tcatcacctaataacacaccagagcac-taccaataacaaatcttaggcctaaaa 897197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 896523 - 896463
Alignment:
Q  246 atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga 306  Q
    |||||||  ||||| ||||||||| || ||| |||||||||||||| ||||||||||||||    
T  896523 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 896463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 202 - 379
Target Start/End: Complemental strand, 10203935 - 10203758
Alignment:
Q  202 atatgccatacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacattttcttaaccacatactcatt 301  Q
    |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  10203935 atatgccatagatcaacaaatctaaatacaagtataacaatcacatactcactagagagcacttatcacttcatcacatttttttaaccacatactcatt 10203836  T
Q  302 agagagcaagtnnnnnnnttcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtattttataa 379  Q
    |||||||||||       |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||    
T  10203835 agagagcaagtaaacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcacattcctgtattttataa 10203758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 12857257 - 12857192
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacc 78  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  12857257 tcatcacctaataacacaccagaacac-tacctataacaaatcttaggcctaaaaacattcataacc 12857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 19794 - 19729
Alignment:
Q  12 tcatcacctaataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacc 78  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  19794 tcatcacctaataacacaccagaacac-tacctataacaaatcttaggtctaaaaacattcataacc 19729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 20257183 - 20257238
Alignment:
Q  22 ataacacaccagaatacatacctataacaaatcttaggcctaaaaacattcataacc 78  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  20257183 ataacacactagaacac-tacctataacaaatcttaggcctaaaaacattcataacc 20257238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University