View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_55 (Length: 425)
Name: NF15941_low_55
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 34780504 - 34780395
Alignment:
| Q |
134 |
gataactcatgcatacaattgaaggagataggattcgaacatcagccgcaacatctgatataacgattttaacatttttatcagttgagttaggactcgt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780504 |
gataactcatgcatacaattgaaggagataggattcgaacatcagccgcaacatctgatataacgattttaacatttttatcagttgagttaggactcgt |
34780405 |
T |
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| Q |
234 |
aaacgaaaca |
243 |
Q |
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|||||||||| |
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| T |
34780404 |
aaacgaaaca |
34780395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 34780292 - 34780218
Alignment:
| Q |
341 |
ctagtaatgaataatttgttttttgagaggagtaatgaataatttgttaaagatgtttgaccgctgcacttcatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780292 |
ctagtaatgaataatttgttttttgagaggagtaatgaataatttgttaaagatgtttgaccgctgcacttcatc |
34780218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 34780621 - 34780565
Alignment:
| Q |
17 |
caagtttcacaacttaacagagataggtctacatcggagactctctaaagaagttga |
73 |
Q |
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| T |
34780621 |
caagtttcacaacttaacagagataggtctacatcggagactctctaaagaagttga |
34780565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 34795006 - 34794962
Alignment:
| Q |
371 |
agtaatgaataatttgttaaagatgtttgaccgctgcacttcatc |
415 |
Q |
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| T |
34795006 |
agtaatgaataatttgttaaagatgtttgaccgctacacttcatc |
34794962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 34795217 - 34795114
Alignment:
| Q |
134 |
gataactcatgcatacaattgaaggagataggattcgaacatcagccgcaacatctgatataacgattttaacatttttatcagttgagttaggactcgt |
233 |
Q |
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|||||||||||||||||| |||| || | ||||||||||| | ||||||| | ||||| ||| ||||||| ||||||| | |||||||||| ||| || |
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| T |
34795217 |
gataactcatgcatacaaccgaagcagttgggattcgaacaataaccgcaacgtttgatacaacaattttaatatttttaacggttgagttagaactagt |
34795118 |
T |
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| Q |
234 |
aaac |
237 |
Q |
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|||| |
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| T |
34795117 |
aaac |
34795114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 22096764 - 22096808
Alignment:
| Q |
186 |
atctgatataacgattttaacatttttatcagttgagttaggact |
230 |
Q |
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||||||| |||| ||||| ||||||| |||||||||||||||||| |
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| T |
22096764 |
atctgatctaacaattttgacattttaatcagttgagttaggact |
22096808 |
T |
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