View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_56 (Length: 420)
Name: NF15941_low_56
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 24790634 - 24791038
Alignment:
| Q |
1 |
tccaccaccgcttcatacggcgccacaacctccctcaccgacgccacaccaaaacctcttctccgaccacctttcctgccaccaccattcctccgaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790634 |
tccaccaccgcttcatacggcgccacaacctccctcaccgacgccacaccaaaacctcttctccgaccacctttcctgccaccaccattcctccgaaacc |
24790733 |
T |
|
| Q |
101 |
tctctctcaacacagccaacttcctcagctccgtaaccaccgccacatcagcaaccctcatcttctctgcatcccaaggtgaatgcgcttcttgtaactt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790734 |
tctctctcaacacagccagcttcctcagctccgtcaccaccgccacgtcagcaaccctcatcttctctgcatcccaaggtgaatgcgcttcttgtaactt |
24790833 |
T |
|
| Q |
201 |
cacataagctctcttcatagacgacaccgtttcgaagatttcttccattaatgcttccatttgcttcaccttcaaaatcttcatacccatcattttgtct |
300 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24790834 |
cacatacgctctcttcatagaagacaccgtttcgaagatttcttccattaatgcttccatttgcttaaccttcaaaatcttcatacccatcattttgtct |
24790933 |
T |
|
| Q |
301 |
tcgttgaattcgtcattttcctccaaagggtcaccattttcatcctcatcttcgtcgtcatcatcaacatcatcactgtgataatgttcttgttcttcgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24790934 |
tcgttgaattcgtcattttcctccaaagggtcaccattttcatcctcatcttcgtcgtcatcatcaacatcatcactgtgataatgttcttgttcttcgt |
24791033 |
T |
|
| Q |
401 |
ctctg |
405 |
Q |
| |
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||||| |
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| T |
24791034 |
ctctg |
24791038 |
T |
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