View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_59 (Length: 408)
Name: NF15941_low_59
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 35446470 - 35446099
Alignment:
| Q |
21 |
aatggaagaatacaacgggcgggaagagcaaaaacaaagacaaagatcaaaatctgtagaatacgaagcagtgatacgtgctggcccacacattcgacct |
120 |
Q |
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| T |
35446470 |
aatggaagaatacaacgggcgggaagagcaaaaacaaagacaaagatcaaaatctgtagaatacgaagcagtgatacgtgctggcccacacattcgacct |
35446371 |
T |
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| Q |
121 |
ctccaacaagctcatgctcatctcattgtctccggtcgtcaccgtagtcgtgcccttctcaccaaactcctcactctctcctccgccgccggttccatcg |
220 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35446370 |
ctccaacaagctcatgctcatctcattgtctcaggtcgtcaccgtagtcgtgccctcctcaccaaactcctcactctctcctccgccgccggttccatcg |
35446271 |
T |
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| Q |
221 |
cctacacccgccgtctcttcctctctgtcaccgaccccgattccttcctctttaattccctcatcaaagcctcttcccagcacggtttctcccttgacac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35446270 |
cctacacccgccgtctcttcctctctgtcaccgaccccgattccttcctctttaattccctcatcaaagcctcttcccagcacggtttctcccttgacac |
35446171 |
T |
|
| Q |
321 |
tatctttttctaccgtcgtatgctttcttcccctcacaaaccttcttcctacactttcacctccgttttcaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35446170 |
tatctttttctaccgtcgtatgctttcttcccctcacaaaccttcttcctacactttcacctccgttttcaa |
35446099 |
T |
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