View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_6 (Length: 585)
Name: NF15941_low_6
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Complemental strand, 36157769 - 36157210
Alignment:
| Q |
11 |
tgagatgaacaaaataat-taagtgcctggcctgaatttgtccatgatttgatcttttgtctctgtg--gattgtggtttatttctgctatctattaaaa |
107 |
Q |
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| T |
36157769 |
tgagatgaacaaaataatgtaagtgcctggcctgaatt-gtccatgatttgatcttttgtctctctgttgactgtggtttatttctgctatctattaaaa |
36157671 |
T |
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| Q |
108 |
cttcttttgtagaagaatactgaacaagaccttctaggaaacaaataaattattatctacactcatgtatggtcaggagttcttgctctttcttgtaaga |
207 |
Q |
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| T |
36157670 |
cttcttttgtagaagaatactgaacaagaccttctaggaaacaaataaattattatctacactcatgtatggtcaggagttcttgctctttcttgtaaga |
36157571 |
T |
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| Q |
208 |
aaaaataaaataagaaagtgggttgacgcgtattagaatatataaatttattttatgtttattagtatgtatcttctatatttggtaacatcttgatagt |
307 |
Q |
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| T |
36157570 |
aaaaataaaataagaaagtgggttgacgcgtattagaatatataaatttattttatatttattagtatgtatcttctatatttggtaacgtcttgatagt |
36157471 |
T |
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| Q |
308 |
tttatataccttccatctaacttttgtctgttta-ttttgctgctcaggcttgatctaacattgctctgggtaaaacatcagtttgctactaccaagaga |
406 |
Q |
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| T |
36157470 |
tttatataccttccatctaacttttgtctgtttatttttgctgctcaggcttgatctaacattgctctgggtaaaacatcagtttgctactaccaagaga |
36157371 |
T |
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| Q |
407 |
aagttggagacctttgttcaggtatgttacatttttctccctctatcataagcgataatgacatgtccatgatagggcatagctgcatgaactcttttag |
506 |
Q |
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| T |
36157370 |
aagttggagacctttgttcaggtatgttacatttttctccctctaacataagcgataatgacatgtccatgatagggcgtagctgcatgaactcttttag |
36157271 |
T |
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| Q |
507 |
gtctttaaaatgcatcttagatgctaactgcatgaaagggaaacaattcttgagtttccaa |
567 |
Q |
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| T |
36157270 |
ctctttaaaatgcatcttagatactaactgcatgaaaaggaaacaattcttgagtttccaa |
36157210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 82 - 567
Target Start/End: Complemental strand, 36152767 - 36152285
Alignment:
| Q |
82 |
tggtttatttctgctat--ctattaaaacttcttttgtagaagaatactgaacaagaccttctaggaaacaaataaatta-ttatctacactcatgtatg |
178 |
Q |
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| T |
36152767 |
tggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgacct---aggaaacaaataaaataattatctacactcatgtatg |
36152671 |
T |
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| Q |
179 |
gtcaggagttcttgctctttcttgtaagaaaaaataaaataagaaagtgggttgacgcgtattagaatatataaatttattttatgtttattagtatgta |
278 |
Q |
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| T |
36152670 |
gtcaagagctcttgctctttcttttaagaaaaaattaaataagaaattggattgacgcgtattagaatatgtaaatatatttcatattta---gtatcta |
36152574 |
T |
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| Q |
279 |
tcttctatatttggtaacatcttgatagttttatataccttccatctaacttttgtctgtttattttgctgctcaggcttgatctaacattgctctgggt |
378 |
Q |
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| T |
36152573 |
tcttctatatttggtaaagtcttgataattttatatacctccgatctaatttttgtctatttattttgctgctcaggctttctcgaacattgctctgggt |
36152474 |
T |
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| Q |
379 |
aaaacatcagtttgctactaccaagagaaagttggagacctttgttcaggtatgttacatttttctccctctatcataagcgataatgacatgtccatga |
478 |
Q |
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| T |
36152473 |
aaaacatgagtttgccaataccaagagaaagttggaggcctttgttcaggtatgttacatttttctccctctcacataagcgacaacgacatgtccatga |
36152374 |
T |
|
| Q |
479 |
tagggcatagctgcatgaactcttttaggtctttaaaatgcatcttagatgctaactgcatgaaagggaaacaattcttgagtttccaa |
567 |
Q |
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| T |
36152373 |
tagggcatagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaggggaaacaattcttgagtttccaa |
36152285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 41708300 - 41708338
Alignment:
| Q |
269 |
ttagtatgtatcttctatatttggtaacatcttgatagt |
307 |
Q |
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| T |
41708300 |
ttagtatgtatcttatatatttagtaacatcttgatagt |
41708338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 25160284 - 25160251
Alignment:
| Q |
274 |
atgtatcttctatatttggtaacatcttgatagt |
307 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
25160284 |
atgtatcttttatatttggtaacatcttgatagt |
25160251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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