View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_60 (Length: 398)
Name: NF15941_low_60
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 25342875 - 25342519
Alignment:
| Q |
18 |
cttgcatatattatacattaatgtctatatcaactgaaataagatcacggggactcttatcacttggattaatccaataacagtgtttttaagtattttc |
117 |
Q |
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| T |
25342875 |
cttgcatatattatgcattaatgtccatatcaactgagctaagctcaggtggactcttatcacttggattaatccattaacagtgtttttaagtattttc |
25342776 |
T |
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| Q |
118 |
taaaatgtgatagaagtacatatatgactccacttttctgaaacgattttggttatggaagtccctttctttagtccgtataattgtcggctaagaaact |
217 |
Q |
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| T |
25342775 |
taaaatgtgatagaagtacatatatgactccacctttctaaaatgattctggttatggaagtccctttctttagtccgtattactgtcggctaagaaact |
25342676 |
T |
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| Q |
218 |
acacacactaaaaacaggttcagtgtaaatccaatgaaaaccattaacatcccttactccaaaacaattgaacaacatgtgcatttattttatgtggtga |
317 |
Q |
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| T |
25342675 |
acacacactaaaaacaggttcagtgtaaatccaatgaaaaccattaacatcccttactccaaaacaattgaacaacatgtgcatttattttatgtggtga |
25342576 |
T |
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| Q |
318 |
atgcatgcaccgtgcattatgttggagtgtgattttgttatactccttgatctccat |
374 |
Q |
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| T |
25342575 |
atgcatgcaccgtgcattatgttggagtgtgattttgttatactccttgatctccat |
25342519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 16580811 - 16580866
Alignment:
| Q |
13 |
cagaccttgcatatattatacattaatgtctatatcaactgaaataagatcacggggac |
71 |
Q |
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| T |
16580811 |
cagaccttgcatatattatacat---tgtccataccaactgaattaagctcacggggac |
16580866 |
T |
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