View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_61 (Length: 398)
Name: NF15941_low_61
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 142 - 386
Target Start/End: Original strand, 33857440 - 33857684
Alignment:
| Q |
142 |
aacaataatccaatatttattatgttaagaacttacttatagaggttgcatgttgttcacttttgacatcatttttcttttagagtagaatggtgttttc |
241 |
Q |
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| T |
33857440 |
aacaataatccaatatttattatgttaagaacttacgtatagaggttacatattgttcacttttgacatcatattttttttagagtagaatggtgttttc |
33857539 |
T |
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| Q |
242 |
tgtgtgcaactacgaagaaaaatttcttgaattttatagtacttaatggatggaaaactcttcttaatagatttaatgtttttgtttagtaattaaaaga |
341 |
Q |
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| T |
33857540 |
tgtgcgcaactacgaagaaaaatttcttgaattttatagtacttaatggatggaaaactcttcttaatagatttaatgtttttgtttagtaattaaaaga |
33857639 |
T |
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| Q |
342 |
tttaatgttgttgcacatccaaagataaatttgaaatcagacctt |
386 |
Q |
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| T |
33857640 |
tttaatgttgttgcacatccaaagataaatttgaaatcagacctt |
33857684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 33857344 - 33857433
Alignment:
| Q |
20 |
tggcatcattaggagcttcaatgaaaatcacatgcaaaaatgatacattgtttgattcccactaacaacaataatccaatattttcttgt |
109 |
Q |
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| T |
33857344 |
tggcatcattaggagcttcaatgaaaatcacatgcaaaaatgatacattgtttgattcccactaacaacaataatccaatattttcttgt |
33857433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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