View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_62 (Length: 397)
Name: NF15941_low_62
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 11161415 - 11161777
Alignment:
| Q |
20 |
aaccgtattggacttaagaaagattgtctaatctcggattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccctta |
119 |
Q |
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| T |
11161415 |
aaccgtattggacttaagaaagattctccaatctcgaattcatctttattagattcggttatctttcattcgactatattggggattcatatgaccctta |
11161514 |
T |
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| Q |
120 |
attcaaccgttttccgttctcaactagccacttaattatttttaggtgtaaacaaatattcacttccaatttcaggcatgtcctaccggtttctctccta |
219 |
Q |
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| T |
11161515 |
attcaactgttttccattctcaactagccacttaattatttttaggtgtaaacaaatgttcacaaccaatttcaggcatgtcctaccggtttctctccta |
11161614 |
T |
|
| Q |
220 |
actaaggatgcatttcgttgatgaccatggatgccgactccgtttcaaagaatttgacataatgttttcgtgcttttttatgaaccttttggaataacag |
319 |
Q |
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| T |
11161615 |
actaaggatgcatttcgttgatgaccatggatgccgactccgtttcaaagaatttgacataatgttttcgtgcctttttatgaaccttttggaataacag |
11161714 |
T |
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| Q |
320 |
ttattccaactgcttcaggtgtcatcttaaccatatgttgatgtccaaaatgatggttagtat |
382 |
Q |
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| T |
11161715 |
ttattccaactgcttcaggtgtcatcttaaccatatgttcatgtccaaaatgatggttagtat |
11161777 |
T |
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