View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_70 (Length: 386)
Name: NF15941_low_70
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 7885907 - 7886263
Alignment:
| Q |
19 |
aatacgaccccaagcactctggtgtggcctcgaagcaaagttgggagattgaccagcaattcaataacaaaagttagcaccgtaacattagatatttctc |
118 |
Q |
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| T |
7885907 |
aatacgtccccaagcactctggtgtggcctcgaagcaaagttgggagattgaccagcagttcaataacaaaagttagcaccgtaacattagatatttctc |
7886006 |
T |
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| Q |
119 |
tacttgatctttcttttcgttttatagatagatcttagtccttacctggcgcatgcaccaaccaaacacccttgaggtctacttttttgcgtgtttatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7886007 |
tacttgatctttcttttcgttttatagatagatcttagtccttacctggcgcatgcaccaaccaaacacccttgaggtctacttttttgcgtgtttatta |
7886106 |
T |
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| Q |
219 |
aatttcgacttcaacgttggaattgcattaattgtaattttgtctacaccaaaatcatataatcttacctgttggaagtatttgccaagacgttacagcg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7886107 |
aatttcgacttcaacgttggaattgcattaattgtaattttgtttacaccaaaatcatataatcttacctgttggaagtatttgctaagacgttacagcg |
7886206 |
T |
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| Q |
319 |
caaacttcctgctgaatctccaacatgggtaaggaacttttggatgtcaatgttctt |
375 |
Q |
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| T |
7886207 |
caaacttcctgctgaatctccaacatgggtaaggaacttttggatgtcaatgttctt |
7886263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 7913179 - 7913282
Alignment:
| Q |
19 |
aatacgaccccaagcactctggtgtggcctcgaagcaaagttgggagattgaccagcaattcaataacaaaagttagcaccgtaacattagatatttctc |
118 |
Q |
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|||||| ||||||| ||| |||| ||||| |||||| ||||||| ||||||||||||| ||||| ||| | ||||||| |||||||| |||||||||| |
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| T |
7913179 |
aatacgtccccaaggactgtggtatggccccgaagcgaagttggcagattgaccagcagttcaaaaac---atttagcactgtaacattggatatttctc |
7913275 |
T |
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| Q |
119 |
tacttga |
125 |
Q |
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|| |||| |
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| T |
7913276 |
tatttga |
7913282 |
T |
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