View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_71 (Length: 384)

Name: NF15941_low_71
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_71
NF15941_low_71
[»] chr2 (5 HSPs)
chr2 (1-366)||(13057842-13058197)
chr2 (173-219)||(10439840-10439886)
chr2 (173-219)||(20140824-20140870)
chr2 (173-219)||(24895773-24895819)
chr2 (171-219)||(11763738-11763787)
[»] chr4 (3 HSPs)
chr4 (158-219)||(38851975-38852036)
chr4 (171-219)||(5505174-5505222)
chr4 (286-339)||(17179526-17179579)
[»] chr3 (2 HSPs)
chr3 (160-220)||(51107678-51107738)
chr3 (143-199)||(36473737-36473793)
[»] chr1 (4 HSPs)
chr1 (160-220)||(9117499-9117559)
chr1 (173-219)||(10840523-10840569)
chr1 (286-339)||(34948419-34948472)
chr1 (170-218)||(45128155-45128203)
[»] chr8 (2 HSPs)
chr8 (275-341)||(11905862-11905928)
chr8 (287-343)||(9424874-9424930)
[»] chr5 (2 HSPs)
chr5 (286-339)||(22436838-22436891)
chr5 (171-219)||(12542110-12542158)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 13058197 - 13057842
Alignment:
Q  1 atgagttagacatgttcttgacatttcgttaagataataatatgatcatagatgagttaaacaaaaatgccataacattaacattaacacgaacataagt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  13058197 atgagttagacatgttcttgacatttcgttaagataataacatgatcatagatgagttaaacaaaaatgtcataacattaacattaatacgaacataagt 13058098  T
Q  101 tatcgattaagaacaaaaaataaaatgtaattttttgaagattgaaatcatccaatcttattttttaacaattaaaatcaaaatttgttatatttttaaa 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13058097 tatcgattaagaacaaaaaataaaatgtaattttctgaagattgaaatcatccaatcttattttttaacaattaaaatcaaaatttgttatatttttaaa 13057998  T
Q  201 gacaaaaaccttatttaacaataggcaatttaataacagcgaaaaatctattcatcggttgattgaaaagtttcatattcatttttattggtggatgaag 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  || ||||||||| |||| ||||||| |||||| ||||||       
T  13057997 gacaaaaaccttatttaacaataggcaatttaataatagcgaaaaatctattcatcaattaattgaaaaggttcaaattcattcttattgatggatg--- 13057901  T
Q  301 acggctaatgctgtttttgtgttaagggttcatagttggttgatttgtcctctcatttgtttgggc 366  Q
           |||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  13057900 -------atgctgtttttgtgttaagggttcatagttggctgacttatcctctcctttgtttgggc 13057842  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 10439840 - 10439886
Alignment:
Q  173 taaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    ||||||||||||||| |||||||||||  ||||||| ||||||||||    
T  10439840 taaaatcaaaatttgatatatttttaacaacaaaaaacttatttaac 10439886  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 20140870 - 20140824
Alignment:
Q  173 taaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    |||||| |||||||||||||||| || ||||||||| ||||||||||    
T  20140870 taaaattaaaatttgttatatttatagagacaaaaatcttatttaac 20140824  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 24895773 - 24895819
Alignment:
Q  173 taaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||||||    
T  24895773 taaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaac 24895819  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 11763787 - 11763738
Alignment:
Q  171 attaaaatcaaaatttgttatatttttaaagac-aaaaaccttatttaac 219  Q
    ||||||||||||||||| |||||||||| |||| ||||| ||||||||||    
T  11763787 attaaaatcaaaatttgctatatttttagagacgaaaaaacttatttaac 11763738  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 38852036 - 38851975
Alignment:
Q  158 ttattttttaacaattaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    |||||||||||  |||||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  38852036 ttattttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaac 38851975  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 5505222 - 5505174
Alignment:
Q  171 attaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    ||||||||||||||| ||||||||| ||||||| |||| ||||||||||    
T  5505222 attaaaatcaaaattcgttatatttataaagaccaaaaacttatttaac 5505174  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 17179526 - 17179579
Alignment:
Q  286 tattggtggatgaagacggctaatgctgtttttgtgttaagggttcatagttgg 339  Q
    ||||||||||||||| ||||||||| ||||||||| ||| ||| ||| ||||||    
T  17179526 tattggtggatgaaggcggctaatgttgtttttgttttagggggtcacagttgg 17179579  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 51107738 - 51107678
Alignment:
Q  160 attttttaacaattaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaaca 220  Q
    |||||||| | | ||||||||||||||||||||||||||| |||||| | |||||||||||    
T  51107738 attttttagcgactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaaca 51107678  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 36473793 - 36473737
Alignment:
Q  143 tgaaatcatccaatcttattttttaacaattaaaatcaaaatttgttatatttttaa 199  Q
    ||||| ||||| || ||||||||||| || |||||||||||||||||| ||||||||    
T  36473793 tgaaaacatcctattttattttttaagaactaaaatcaaaatttgttaaatttttaa 36473737  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 9117499 - 9117559
Alignment:
Q  160 attttttaacaattaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaaca 220  Q
    ||||||||| || ||||||||||||||||||||||| ||  |||||||| |||||||||||    
T  9117499 attttttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaaca 9117559  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 10840523 - 10840569
Alignment:
Q  173 taaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||||    
T  10840523 taaaatcaaaatttgttatattttcaaagaaaaaaatcttatataac 10840569  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 34948419 - 34948472
Alignment:
Q  286 tattggtggatgaagacggctaatgctgtttttgtgttaagggttcatagttgg 339  Q
    |||| |||||||||| ||||||||| ||||| ||| ||| ||||||||||||||    
T  34948419 tattagtggatgaaggcggctaatgttgtttatgttttaggggttcatagttgg 34948472  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 45128155 - 45128203
Alignment:
Q  170 aattaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaa 218  Q
    |||||||| ||||||| |||||||||||| |||| |||| |||||||||    
T  45128155 aattaaaaacaaaattcgttatatttttagagaccaaaaacttatttaa 45128203  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 11905928 - 11905862
Alignment:
Q  275 atattcatttttattggtggatgaagacggctaatgctgtttttgtgttaagggttcatagttggtt 341  Q
    |||||||||  ||||||||||||||| |||| |||||   |||||||||| |||||||||| |||||    
T  11905928 atattcattcgtattggtggatgaaggcggccaatgccaattttgtgttaggggttcatagctggtt 11905862  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 9424930 - 9424874
Alignment:
Q  287 attggtggatgaagacggctaatgctgtttttgtgttaagggttcatagttggttga 343  Q
    |||||||||||||| | ||||||| ||||| ||| ||| ||||||||||||| ||||    
T  9424930 attggtggatgaaggcagctaatgatgtttatgttttaggggttcatagttgtttga 9424874  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 22436891 - 22436838
Alignment:
Q  286 tattggtggatgaagacggctaatgctgtttttgtgttaagggttcatagttgg 339  Q
    ||||||||||||||| | |||||||| |||| | ||||| ||||||||||||||    
T  22436891 tattggtggatgaaggctgctaatgcagtttatctgttaggggttcatagttgg 22436838  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 12542158 - 12542110
Alignment:
Q  171 attaaaatcaaaatttgttatatttttaaagacaaaaaccttatttaac 219  Q
    |||||||||||||||  |||||||| || ||||||||| ||||||||||    
T  12542158 attaaaatcaaaattcattatatttatagagacaaaaaacttatttaac 12542110  T

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