View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_72 (Length: 383)
Name: NF15941_low_72
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 52248122 - 52248481
Alignment:
| Q |
18 |
cattactgatgatattgttgatggagtgagtggtggcgtagccggtgaagaagaagaagtagaaaccacaacaacagcnnnnnnnnnnnnnnnnnnnctc |
117 |
Q |
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| T |
52248122 |
cattactgatgatattgttgatggagtgagtggtggcgtagccggtgaagaagaagaagtagaaaccacaacaacaacattattattattattattactc |
52248221 |
T |
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| Q |
118 |
tcattcaccattccatcgcagaaccttctgtgcgtaacaaaattatccttcctataaacaaatagataacattaacaaaacagaaaatgatcaatatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
52248222 |
tcattcaccattccatcgcagaaccttctgtgcgtaacaaaattatccttcctataaacaaataaataacattaacaaaacagaaaataatcaatatttt |
52248321 |
T |
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| Q |
218 |
gagagataattaaagat----ggaaaagaaattaacctagaaaacactgtgccacaatcacatttatactctctagttccacagctcttcatatgaactt |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248322 |
gagagataattaaagatcgatggaaaagaaattaacctagaaaacactgtgccacaatcacatttatactctctagttccacagctcttcatatgaactt |
52248421 |
T |
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| Q |
314 |
tcaaatcacatttcgcagcgtattttttagaacaacgttcacatttccatttcttctcac |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52248422 |
tcaaatcacatttcgcagcgtattttttagaacaacgttcacatttccatttcttctcac |
52248481 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 22085520 - 22085580
Alignment:
| Q |
261 |
tgtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatca |
321 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||| |
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| T |
22085520 |
tgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatca |
22085580 |
T |
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