View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_73 (Length: 382)

Name: NF15941_low_73
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_73
NF15941_low_73
[»] chr3 (14 HSPs)
chr3 (18-369)||(9336556-9336907)
chr3 (20-369)||(9329852-9330201)
chr3 (98-346)||(9395298-9395549)
chr3 (269-362)||(41980877-41980970)
chr3 (267-368)||(9756397-9756498)
chr3 (269-369)||(41985644-41985744)
chr3 (272-369)||(9494811-9494908)
chr3 (268-368)||(9695615-9695715)
chr3 (269-369)||(9343861-9343961)
chr3 (269-369)||(9407382-9407482)
chr3 (269-369)||(9448330-9448430)
chr3 (269-348)||(9485969-9486048)
chr3 (269-348)||(13864241-13864320)
chr3 (268-369)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (260-344)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (261-348)||(7025793-7025880)
chr6 (260-367)||(7041514-7041621)
chr6 (261-348)||(7029850-7029937)
chr6 (258-348)||(7012857-7012947)
chr6 (258-348)||(9170854-9170944)
chr6 (269-349)||(7046875-7046955)
chr6 (258-348)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (325-369)||(4439876-4439920)
chr1 (333-369)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (328-369)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 9336907 - 9336556
Alignment:
Q  18 ttgttgtggggacgacagttggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336907 ttgttgtggggacgacagttggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaa 9336808  T
Q  118 gctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9336807 gctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggtcgagagtagtgagt 9336708  T
Q  218 ttgagttgttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336707 ttgagttgttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgac 9336608  T
Q  318 gaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9336607 gaatttaggagataaggttttgttcttggggaatggatgttcgttttctgct 9336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 9330201 - 9329852
Alignment:
Q  20 gttgtggggacgacagttggaccatgatacccaacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagc 119  Q
    ||||||||||||| |||||||| |  || ||||||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||| ||||||||| |    
T  9330201 gttgtggggacgatagttggactaccatccccaacatgtcaaactcccatggaggaaatgtttgtgtttttaaagggcggccttgtgttgtagacaaaac 9330102  T
Q  120 tggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagttt 219  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  9330101 tggtcggactttcatgattggaccggatttaaccactcatttgatcgctgagccggtgtttggtgggaaaagtaaattcttggtcgagagtagtgagttt 9330002  T
Q  220 gagttgttgctggtggatagatatgaaaattattgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacga 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  9330001 gagttgttgctggtggatagatatgaaaattatcgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcga 9329902  T
Q  320 atttaggagataaggttttgttcttggggaatggatgttcgttctctgct 369  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  9329901 atttaggagataaggttttgttcttggggaatggatattcgttttctgct 9329852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 98 - 346
Target Start/End: Complemental strand, 9395549 - 9395298
Alignment:
Q  98 ggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaatt 197  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| | | || |||| |  |||||| || |||||||| ||| |||| ||  ||| ||||||    
T  9395549 ggccttgtatggtagacaaaactggtcggactgttatgattgaatcagacttgagctatcattttatagctgagcctgtgattggcggagaaagtaaatt 9395450  T
Q  198 cttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaattatt---gtgttcctgtatggattgatgtgtttaggcttgatgagaaa 294  Q
    |||||| |||| |||||| ||| |||||||||| ||||||| |||| ||||| ||    |||||  |||| ||||||||||||||||||||||||||||     
T  9395449 cttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatgagaag 9395350  T
Q  295 gagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgg 346  Q
     |||||| |||||| ||| |||| ||||||||||||  ||||||||||||||    
T  9395349 cagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 362  Q
    |||||||||||||||||| | |||||||||| |  ||||||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 368
Target Start/End: Complemental strand, 9756498 - 9756397
Alignment:
Q  267 gattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctct 366  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||| || |||| ||||||||| || ||| | || ||||| ||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctct 9756399  T
Q  367 gc 368  Q
    ||    
T  9756398 gc 9756397  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 368  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  369 t 369  Q
    |    
T  41985644 t 41985644  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 9494811 - 9494908
Alignment:
Q  272 atgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 369  Q
    ||||| |||||||||||||||| ||||  || ||||| ||  ||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 9695615 - 9695715
Alignment:
Q  268 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 367  Q
    |||||||| || |||||||||||||| ||||| | |||||||||| |||| |||||||| |||| ||||||||| |||||| | |  |||||||||||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctg 9695714  T
Q  368 c 368  Q
    |    
T  9695715 c 9695715  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 9343961 - 9343861
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 368  Q
    |||||||||||| |||||||||||  ||||| | |||||| ||| | || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  369 t 369  Q
    |    
T  9343861 t 9343861  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 9407482 - 9407382
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 368  Q
    ||||||||||||| ||||| |||||  | ||||| ||||| ||| ||| || |||||| |||| |||||||||||| | |||||||||||| || |||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  369 t 369  Q
    |    
T  9407382 t 9407382  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 9448430 - 9448330
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 368  Q
    |||||||||||| |||| ||||||| ||||| |  ||||| ||| | || | |||||| ||||  |||||||||||||||||||  |||||||| |||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  369 t 369  Q
    |    
T  9448330 t 9448330  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 9485969 - 9486048
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    ||||||||||||||||||||||||| ||||| | ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    ||||||||||||||||||||||||  ||||||| ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 369
Target Start/End: Original strand, 9617462 - 9617563
Alignment:
Q  268 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 367  Q
    ||||| ||||| ||| || ||||||||||||| |  ||||| ||| |||  |||||||| |||| |||||||||| | | |||||||||||| || ||||    
T  9617462 attgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctg 9617561  T
Q  368 ct 369  Q
    ||    
T  9617562 ct 9617563  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 450102 - 450186
Alignment:
Q  260 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 344  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||   ||||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  261 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 7041621 - 7041514
Alignment:
Q  260 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 359  Q
    |||||||||||||| ||||||  ||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  360 gttctctg 367  Q
    ||||||||    
T  7041521 gttctctg 7041514  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  261 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||| || |||| ||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 7012947 - 7012857
Alignment:
Q  258 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  7012947 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 9170944 - 9170854
Alignment:
Q  258 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 7046955 - 7046875
Alignment:
Q  269 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggga 349  Q
    ||||| |||||| |||| ||||||| ||||| | |||||| ||| | |||| |||||| ||||| ||||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 348
Target Start/End: Original strand, 9159484 - 9159574
Alignment:
Q  258 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 348  Q
    ||||||| |||||||| |||||| |||| | ||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9159484 tcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 4439920 - 4439876
Alignment:
Q  325 ggagataaggttttgttcttggggaatggatgttcgttctctgct 369  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4439920 ggagatagggttttgtttttggggaatggatgttcgttttctgct 4439876  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 18991256 - 18991220
Alignment:
Q  333 ggttttgttcttggggaatggatgttcgttctctgct 369  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18991256 ggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 20694360 - 20694401
Alignment:
Q  328 gataaggttttgttcttggggaatggatgttcgttctctgct 369  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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