View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_76 (Length: 377)
Name: NF15941_low_76
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 26166077 - 26166426
Alignment:
| Q |
12 |
aagaattcatataggtttttagtttctttttgtaatcattttagagtaaaa-gtagcaagttttattgtaattttagcataggtttgtaaaggattagtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26166077 |
aagaattcatataggtttttagtttctttttgtaatcattttagagtaaaaagtagcaagttttattgta-ttttagcataggtttgtaaaggattagtt |
26166175 |
T |
|
| Q |
111 |
caaaagttatgaaatagaaaaaattgggatatagactttggaacatgtcaaaatcactcaaactagacaactttgtgaacgtgctatgcttattacaaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26166176 |
caaaagttatgaaatagaaaaaattgggaaatagactttggaacatgtcaaaatcactcaaattagacaactttgtgaacgtgctatgcttattacaaat |
26166275 |
T |
|
| Q |
211 |
ttaatcatgttaggtcttgggatatagtcattacaaatgttttggtgagaaaagtaggacaaggaatgaagaaaagcaaaatgaac-actactacctaca |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26166276 |
ttaatcatgttaggtcttggggtatagtcattacaaatgttttggtgagaagagtaggacaaggaatgaagaaaagcaaaatgaacaactactacctaca |
26166375 |
T |
|
| Q |
310 |
tgcatcgcgacattgaaggaaagtcataagtgtttcaccattgcctcggtc |
360 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26166376 |
tgcatcgcgacattgaaggaaagtcgtaagtgtttcaccattgcctcggtc |
26166426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 24763514 - 24763417
Alignment:
| Q |
164 |
tcactcaaactagacaactttgtgaacgtgctatgcttattacaaatttaatcatgttaggtcttgggatatagtcattacaaatgttttggtgagaa |
261 |
Q |
| |
|
|||| |||||||| |||||| |||| | | |||||||||||||| ||| ||||||||| | ||||| |||| ||||||| | ||||||||||||| |
|
|
| T |
24763514 |
tcacccaaactagtcaacttcgtgaccaagatatgcttattacaagttttatcatgttaaattttggggtataatcattacggacgttttggtgagaa |
24763417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 30697705 - 30697531
Alignment:
| Q |
12 |
aagaattcatatagg-tttttagtttctttttgtaatcattttagagtaaaagtagcaagttttattgtaattttagcataggtt-tgtaaaggattagt |
109 |
Q |
| |
|
||||| ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||| | || || | ||||||||| || |
|
|
| T |
30697705 |
aagaaatcatatagggtttttagtggctttttagagtcattttagagtaaaagtagcaagttttattg-cattttagtagagtttctttaaaggattcgt |
30697607 |
T |
|
| Q |
110 |
tcaaaagttatgaaatagaaaaaattgggatatagactttggaacatgtcaaaatcactcaaactagacaactttgtga |
188 |
Q |
| |
|
|||||||| || ||| || ||||||||| | || ||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30697606 |
tcaaaagtcataaaagag-aaaaattggaaaat-gacctt-gaaaatgtcaaaatcactcaaactagacaactttgtga |
30697531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 18851381 - 18851309
Alignment:
| Q |
50 |
ttttagagtaaaagtagcaagttttattgtaattttagcataggtttgtaaaggattagttcaaaagttatgaa |
123 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||| ||| ||||||||| ||| |||||||||| ||||| |
|
|
| T |
18851381 |
ttttagagttaaagtagcaggttttattgt-attttagtatacttttgtaaagaattcgttcaaaagtcatgaa |
18851309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 34119907 - 34119773
Alignment:
| Q |
155 |
atgtcaaaatcactcaaactagacaactttgtgaacgtgctatgcttattacaaatttaatcatgttaggtcttgggatatagtcattacaaatgttttg |
254 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||| |||||||||| ||| || |||||| ||| | ||||||| |||||| |||||| |
|
|
| T |
34119907 |
atgtcaaaatcacccaaactagacaactttgtgaccgtactatacttattacaagttttataatgttaattctgaaggtatagtcgctacaaacgttttg |
34119808 |
T |
|
| Q |
255 |
gtgagaa-aagtaggacaaggaatgaagaaaagca |
288 |
Q |
| |
|
|||| || || ||||||||||||||||||||||| |
|
|
| T |
34119807 |
gtgaaaagaaaaaggacaaggaatgaagaaaagca |
34119773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 291
Target Start/End: Complemental strand, 16649468 - 16649319
Alignment:
| Q |
143 |
agactttggaacatgtcaaaatcactcaaactagacaactttgtgaacgtgctatgcttattacaaatttaatcatgttaggtcttgggatatagtcatt |
242 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| | |||| | | |||| ||||||||| ||| ||||||||| | || || ||||||| || |
|
|
| T |
16649468 |
agactttggaacatgccaaagtcactcaaactagacaacctcgtgatcatactatatttattacaatttttatcatgttaattattagggtatagtcgtt |
16649369 |
T |
|
| Q |
243 |
acaaatgttttggtgagaa-aagtaggacaaggaatgaagaaaagcaaaa |
291 |
Q |
| |
|
||| | ||||||||| || || | || ||||||| ||||||||||||| |
|
|
| T |
16649368 |
acatacattttggtgataagaaatgtgataaggaataaagaaaagcaaaa |
16649319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 24695458 - 24695550
Alignment:
| Q |
197 |
tgcttattacaaatttaatcatgttaggtcttgggatatagtcattacaaatgttttggtga-gaaaagtaggacaaggaatgaagaaaagca |
288 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||| || || | ||| |||| ||||||||||||| |
|
|
| T |
24695458 |
tgcttattacaagttttatcatgttaattcttggggtatagtcattacgaatgttttggtgatgagaattgggataagggatgaagaaaagca |
24695550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University