View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_78 (Length: 371)
Name: NF15941_low_78
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 4502048 - 4502389
Alignment:
| Q |
20 |
ataaagaccacattaaattgagattttcgtaccattattgaattggcgagtgtcttagtccaagggatttggccactttcgtttgattgaattgatcact |
119 |
Q |
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| T |
4502048 |
ataaagaccacattaaattgagattttcgtaccattattgaattggcaagtgtcttagtccaagggatttggccacttccgtttgattgaattgatcact |
4502147 |
T |
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| Q |
120 |
atctgaaagttcaatctagttgaatgtgaattttcctctaatcgctttcccacctaattccagtacctcaatttctatcatatagtttttctttgttgtt |
219 |
Q |
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| T |
4502148 |
atccgaaagttcaatctagatgaatgtgatttttcctctaatcgctttcccacccaattccagtacctcaatttctatcatatagtttttctttgttgtt |
4502247 |
T |
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| Q |
220 |
cactctttcaatgataaattcttcnnnnnnnngaaa------agactctttcaacgataatgaaacctacccgaattatttaagactttgcttttgtttt |
313 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
4502248 |
gactctttcaatgataaattcttcaaaaaaaaaaaaaaaaagagactctttcaatgataatgaaacctgcccgaattatttaagactttgcttttatttt |
4502347 |
T |
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| Q |
314 |
tggattgagtacaaattcgtgctcaagtgtggttgctttctt |
355 |
Q |
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| T |
4502348 |
tggattgagtacaaattcgtgctcaagtgtggttgctttctt |
4502389 |
T |
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