View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_79 (Length: 357)
Name: NF15941_low_79
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 885365 - 885693
Alignment:
| Q |
18 |
gtttatttgtccatcatcctcttgaaaatgagnnnnnnnnngagaattgtgtagctcaactgatttgagcttatggttaaagaagttggatgtctcgagt |
117 |
Q |
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| T |
885365 |
gtttatttgtccatcatcctcttgaaaatgagttttttttagagaattgtgtagctcaactgatttgagcttatggtcaaagaagttggatgtctcgagt |
885464 |
T |
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| Q |
118 |
ttaaatcttaacataggagnnnnnnnnntggggtttcatgattcataataattggaataatgcactttatgtacattaacaaaatgtaagatgaactaga |
217 |
Q |
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| T |
885465 |
ttaaatcttaacataggaggaaaaaaaatggggtttcatgattcataataataggaataatgcactttatgtacattaacaaaatgaaagatgaactaga |
885564 |
T |
|
| Q |
218 |
ttttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatactagttaacaaaaggtagaagcaattaatgcattcc |
317 |
Q |
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| T |
885565 |
ttttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatactagttaacaaaaggtagaagcaattaatgcattcc |
885664 |
T |
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| Q |
318 |
tacaaactctccctctccaactcattcat |
346 |
Q |
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| T |
885665 |
tacaaactctccctctccaactcattcat |
885693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 1849107 - 1849159
Alignment:
| Q |
200 |
aatgtaagatgaactagattttc-cccttttattaggccttgaaatgcataat |
251 |
Q |
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|||| |||||||||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
1849107 |
aatgaaagatgaactagtttttttcccttatattaggccttgaaatgcataat |
1849159 |
T |
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