View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_8 (Length: 579)
Name: NF15941_low_8
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 54 - 370
Target Start/End: Complemental strand, 46775946 - 46775630
Alignment:
| Q |
54 |
gagggggatttacatacctaatattttaaggttttgtgtaaatatttggtgtcaaccatgttgttgttcatagctcaacgtgcctctatattttagactc |
153 |
Q |
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| T |
46775946 |
gagggggatttacatacctaatattttaaggttttgtgtaaatatttggtgtcaaccatgttgttgttcatagctcaacgtgcctctatattttagactc |
46775847 |
T |
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| Q |
154 |
cctcacaactcaacatgcacatatagaccatgtaccattcttttcctctgagaattacagaagaagattttcagttctgcttcgagtccttatccatgta |
253 |
Q |
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| T |
46775846 |
cctcacaactcaacatgcacatatagaccatgtaccattcttttcctctgagaattacataagaagattttcagttctgcttcgagtccttatccatgta |
46775747 |
T |
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| Q |
254 |
tccttttcaaagnnnnnnntctgagagctggaggatatttgtcattgatgtttaatatctttgaattgtgaggtattgtgcaaaaattgcaaatagacct |
353 |
Q |
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| T |
46775746 |
tccttttcaaagaaaaaaatctgagagctggaggatatttttcattgatgtttaatatctttggattgtgaggtattgtgcaaaagttgcaaatagacct |
46775647 |
T |
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| Q |
354 |
agccaataccaccttgg |
370 |
Q |
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| T |
46775646 |
acccaatgccaccttgg |
46775630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 46775548 - 46775436
Alignment:
| Q |
452 |
gaatctagcatttctttgtatttgaaatttgtttcccctttattaagctgaggttcgtgtggtggtccttggtggggctattttaattcaggctagtttt |
551 |
Q |
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| T |
46775548 |
gaatctagcatttccttgtatttgaaatttgtttcccctttattaagctgaggttcgtgtggtggtccttggtggggctattttaattcaggctagtttt |
46775449 |
T |
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| Q |
552 |
tcagttgattact |
564 |
Q |
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| T |
46775448 |
tcagttgattact |
46775436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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