View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_80 (Length: 357)
Name: NF15941_low_80
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 30749627 - 30749953
Alignment:
| Q |
11 |
cagagaagagggaaaagctgtaggagagatataccaagagagacaaaaatcaggggagaagagccatcaaaattggggatttgttcatccactgagggag |
110 |
Q |
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| T |
30749627 |
cagagaagagggaaaagttgtaggagagatataccaagagagacaaaa-tcaggggagaagagccaacaaaattggagatttgttcatccactgagggag |
30749725 |
T |
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| Q |
111 |
ataacaactgaaaacaatgaacaactccacgaaaggaaagaaaggagattcaggatcttggagccctccatatcaaaatttgtgttgaaacaacaattaa |
210 |
Q |
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| T |
30749726 |
ataacaactgaaaacaatgaacaactccacgaacggaaggaaaggagattcaggatcttggagccctccatatcaaaatttgtgttgaaacaacaattag |
30749825 |
T |
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| Q |
211 |
taaatgatttttcaaatttaagtttgttctgtttggagttgggaagtagttgtattccatttggcacaatacaaatattgtttcttaatttattttatct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||| |
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| T |
30749826 |
gaaatgatttttcaaatttaagtttgttctgtttggagttgggaagtagttgtattccatctggagcaatataaatattgtttcttaatttatttcatct |
30749925 |
T |
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| Q |
311 |
aggttcttacacaaccagatgtggttgt |
338 |
Q |
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| T |
30749926 |
aggttcttacacaaccagaagtggttgt |
30749953 |
T |
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