View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_81 (Length: 356)
Name: NF15941_low_81
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 831916 - 832242
Alignment:
| Q |
11 |
cacagaaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgccgaaagaattaata |
110 |
Q |
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| T |
831916 |
cacagaaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgccgaaagaattaata |
832015 |
T |
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| Q |
111 |
gtggtataaacttgcctttcttgattagacaactcagaacagaatacatacatagacattgtatttgtcgattcatctt-gaatgttgttgcaaagtttt |
209 |
Q |
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| T |
832016 |
gtggtataaacttgcctttcttgattagacaactcagaacagaatacatacatagacattgtatttgtcgattcatcttggaatgttgttgcaaagtttt |
832115 |
T |
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| Q |
210 |
aacatagtggaagcatcgagtttattcacaacaatataaataagatctagtgtca-aaaaattttttgcacctatgtatgttgctaaacagtttcggtaa |
308 |
Q |
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| T |
832116 |
aacatagtggaaacatcgagtttattcacaacaatataaataagatctagtgtcagaaaaaatgtaagcacc----tatgttgctaaacagtttcggtaa |
832211 |
T |
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| Q |
309 |
catatctttagtaacaacaactaagaaatgt |
339 |
Q |
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| T |
832212 |
catatctttagtaacaacaactaagaaatgt |
832242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 799274 - 799493
Alignment:
| Q |
16 |
aaaaacaatggaggaaagaattgtatatggttctatatataggtagcaagatctgggacaagacaatcttgtttcatctgccgaaaga-attaatagtgg |
114 |
Q |
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| T |
799274 |
aaaaacaatggaggaaagaattacatacggtgc----tataggtaacaagatccggaactagaccatcatgtttcatctgccgaaagagtttcatggtgg |
799369 |
T |
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| Q |
115 |
tat-aaacttgcctttcttgattagacaactcagaacagaa-tacatacatagacattgt-atttgtcgattcatcttgaatgttgttgcaaagttttaa |
211 |
Q |
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| T |
799370 |
tatcaaacttgcctttcttgataagacaactgagaacagaattacatacatagacattgtccttggccgattcaacttgaatgtcgttgtacagctttag |
799469 |
T |
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| Q |
212 |
catagtggaagcatcgagtttatt |
235 |
Q |
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| T |
799470 |
catcgtggaagcatcaagtttatt |
799493 |
T |
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