View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_88 (Length: 344)
Name: NF15941_low_88
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_88 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 28295956 - 28295624
Alignment:
| Q |
12 |
atgaactttttatattctttcatgtagctgtgatttgatgcaaaccattttcataatactatcatctatctatatatatgataaagattatctcaaaatt |
111 |
Q |
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| T |
28295956 |
atgaactttttatattctttcatgtagctgtgatttgatgcaaaccattttcatcatactatcatctatcgatatatatgttaaagattatctcaaaatt |
28295857 |
T |
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| Q |
112 |
gtcaaagctcatcgtttctgttgaaactcaaagcatggcttccagtctctatatgctaacccttttctacttgtccttaattttcttcaatatccccgct |
211 |
Q |
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| T |
28295856 |
gtcaaagctcatcgtttctgttgaaactcaaagcatggcttccagtctctatatcctaacccttttctacatgtccttaattttcttcaatatcccagct |
28295757 |
T |
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| Q |
212 |
agctcaattcacttcaaatatcccaattttgatcctagtgatgccaacatagtctaccaaggttctgcagcacctcgtgatggagaagttaatttcaaca |
311 |
Q |
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| T |
28295756 |
agctcaattcacttcaaatatcccagttttgatcctagtgatgccaacatagtctatcaaggttctgcagcacctcgtgatggagaagttaatttcaaca |
28295657 |
T |
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| Q |
312 |
tcaatgaaaattattcttgtcaagttggaagag |
344 |
Q |
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| T |
28295656 |
tcaatgaaaattattcatgtcaagttggaagag |
28295624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 340
Target Start/End: Complemental strand, 28305955 - 28305830
Alignment:
| Q |
215 |
tcaattcacttcaaatatcccaattttgatcctagtgatgccaacatagtctaccaaggttctgcagcacctcgtgatggagaagttaatttcaacatca |
314 |
Q |
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| T |
28305955 |
tcaattcacttccaaattcccagttttaatccaaatgatgccaacataatctaccaaggttctgcagcaccagttgatggagaagttgattttaacatca |
28305856 |
T |
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| Q |
315 |
atgaaaattattcttgtcaagttgga |
340 |
Q |
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| T |
28305855 |
atggaaattattcatgtcaagttgga |
28305830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 344
Target Start/End: Original strand, 28287767 - 28287933
Alignment:
| Q |
181 |
cttgtccttaattttcttcaatatccccgctagctcaattcacttc-aaatatcccaattttgatcctagtgatgccaacatagtctaccaaggttctgc |
279 |
Q |
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| T |
28287767 |
cttgtccttaaatttcttaattttcccttctaattcaattcacttccaaatttctca-ttttaatcctagtgatgccaacatagtctaccaaggttctgc |
28287865 |
T |
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| Q |
280 |
agcacctcgtgatggagaagttaatttcaacatcaatga---aaattattcttgtcaagttggaagag |
344 |
Q |
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| T |
28287866 |
agcaccaatcgatggagaggttgatttcaacatcaatgatgcatattatactagtcaagttggaagag |
28287933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 342
Target Start/End: Complemental strand, 28265975 - 28265804
Alignment:
| Q |
171 |
cccttttctacttgtccttaattttcttcaatatccccgctagctcaattcacttcaaatatcccaattttgatcctagtgatgccaacatagtctacca |
270 |
Q |
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||||||||| |||||| || |||||||||| | |||| | | |||||||||||| || | ||| |||| |||||| |||||| |||||||||||||| |
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| T |
28265975 |
cccttttcttcttgtcatttattttcttcactttcccttcaaattcaattcacttccaaattaccagttttaatcctaatgatgcaaacatagtctacca |
28265876 |
T |
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| Q |
271 |
aggttctgcagcacctcgtgatggagaagttaatttcaacatcaatgaaaattattcttgtcaagttggaag |
342 |
Q |
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|||||| |||||||| || |||||| | ||| |||| ||||| ||||||| ||| | | |||||||||||| |
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| T |
28265875 |
aggttcagcagcaccacgagatggaaaggttgattttaacatttatgaaaagtatccatttcaagttggaag |
28265804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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