View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_9 (Length: 577)
Name: NF15941_low_9
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 5052535 - 5051992
Alignment:
| Q |
18 |
aaagtgaccaaatcatctctcctaggttaatgtaacaccatggaatgaaacaggcagcctggcaggtaccaagaacaatagagtaaccaaaaacaaaata |
117 |
Q |
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| T |
5052535 |
aaagtgaccaaatcatctctcctaggttaatgtaacaccatggaatgaaacaggcagcctggcaggtaccaagaacaatagagtaaccaaaaacaaaata |
5052436 |
T |
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| Q |
118 |
aagtgattcctccattgctggatggttgaacatggagaaacttgatcacgaaattttactccattgcacatcacagaagtgaagggcatccctgttatat |
217 |
Q |
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| T |
5052435 |
aagtgattcctccattgctggatggttgaacatggagaaacttgatcacgaaattttactccattg---------------aagggcatccctgttatag |
5052351 |
T |
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| Q |
218 |
caccgtgcaaatttgatattaactactatatttgaaatccatattgtatattataatcaannnnnnnaacattgactagttaagtcaatgcaaaacatta |
317 |
Q |
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| T |
5052350 |
caccgtgcaaatttgatattaactactatatttgaaagccatattgtatattataatcaaattttttaacattgactagttaagtcaatgcaaagcatta |
5052251 |
T |
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| Q |
318 |
aaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtactattgtcttcaatgttcactgaatattccaatcc |
417 |
Q |
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| T |
5052250 |
aaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatctgaaaccaaggtactattgtcttaaatgttcactgaat-ttccaatcc |
5052152 |
T |
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| Q |
418 |
aaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaacatggcagtaagtaaagggaatg |
517 |
Q |
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| T |
5052151 |
aaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaacatggcagtaagtaaagggaatg |
5052052 |
T |
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| Q |
518 |
agggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctc |
577 |
Q |
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| T |
5052051 |
agggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctc |
5051992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 5048602 - 5048513
Alignment:
| Q |
151 |
ggagaaacttgatcacgaaattttactccattgcacatcacagaagtgaagggcatccctgttatatcaccgtgcaaatttgatattaact |
241 |
Q |
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| T |
5048602 |
ggagaaacttgatcacaaaacttaactctatcgcacatcacaaaagtgaagggcatccctatt-taggaccgtgcaaatttgatattaact |
5048513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 5048273 - 5048194
Alignment:
| Q |
304 |
aatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtac |
383 |
Q |
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| T |
5048273 |
aatgcaaagcattaaaacatatccaaatttgatgagatcatgaccaagtcagaacagtcaaacatttgaaactaaggtac |
5048194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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