View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_90 (Length: 342)

Name: NF15941_low_90
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_90
NF15941_low_90
[»] chr1 (2 HSPs)
chr1 (14-325)||(15594081-15594392)
chr1 (11-276)||(4679414-4679679)
[»] chr7 (10 HSPs)
chr7 (11-325)||(8586520-8586834)
chr7 (11-318)||(8615755-8616062)
chr7 (67-323)||(3146363-3146619)
chr7 (232-324)||(8666680-8666772)
chr7 (67-184)||(8645976-8646093)
chr7 (122-324)||(13334180-13334382)
chr7 (73-184)||(8640653-8640764)
chr7 (122-324)||(10495186-10495388)
chr7 (234-324)||(6788775-6788865)
chr7 (236-325)||(17259498-17259587)
[»] chr4 (1 HSPs)
chr4 (9-321)||(30774290-30774602)
[»] chr2 (3 HSPs)
chr2 (83-267)||(16662867-16663051)
chr2 (232-325)||(16658334-16658427)
chr2 (232-281)||(12246267-12246316)
[»] chr8 (2 HSPs)
chr8 (73-182)||(43743918-43744027)
chr8 (69-179)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (94-182)||(28219041-28219129)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 15594081 - 15594392
Alignment:
14 ttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcat 113  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15594081 ttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcat 15594180  T
114 ttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcan 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
15594181 ttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcat 15594280  T
214 nnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgata 313  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
15594281 ttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcaggata 15594380  T
314 ccattttcatcg 325  Q
     |||||||||||    
15594381 gcattttcatcg 15594392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 4679679 - 4679414
Alignment:
11 ttattcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagag 110  Q
    ||||||||||||||||| || |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | ||    
4679679 ttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaag 4679580  T
111 catttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaat 210  Q
    ||||  | |  |||||||||||    || |||||| |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| |||    
4679579 cattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaat 4679480  T
211 cannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtatt 276  Q
    ||       || || | ||| || |||||||||||| ||||||||||| ||||||| ||| |||||    
4679479 cagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgtatt 4679414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 8586834 - 8586520
Alignment:
11 ttattcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagag 110  Q
    |||||||||||||||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| ||||    
8586834 ttattcttatcaagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagag 8586735  T
111 catttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaat 210  Q
    |||| || |||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||    
8586734 cattccttaacttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaat 8586635  T
211 cannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatg 310  Q
    ||       ||||||||  || || ||||||||||||||||||||||| || || |||||||||||||||| |||| |||||||| |||||||||| | |    
8586634 cagtcttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggatatttccttcgcagaaacagttagg 8586535  T
311 ataccattttcatcg 325  Q
    |||||||||||||||    
8586534 ataccattttcatcg 8586520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 8615755 - 8616062
Alignment:
11 ttattcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagag 110  Q
    |||||| ||||||||||||||| |||||| |||||||||   || || |||  ||||| || ||| || || |||||    |||||||||||||| ||||    
8615755 ttattcctatcaagcaaatttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagag 8615854  T
111 catttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaat 210  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| || || ||||| |||||||||||    
8615855 cattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaat 8615954  T
211 cannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatg 310  Q
    ||       ||||||||  || || ||||||||||||||||||||||| || || || |||||||||||||| ||| |||||||| |||| ||||| | |    
8615955 cagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcatttgtattgccagtagatttttccttcgcagatacagtaagg 8616054  T
311 ataccatt 318  Q
    ||||||||    
8616055 ataccatt 8616062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 323
Target Start/End: Original strand, 3146363 - 3146619
Alignment:
67 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 166  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
167 aggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatct 266  Q
    || ||||| ||||| ||| |||| || |  || |||||||  ||||       |||||| |  | |||||| |||||||||||||| |||| ||| ||||    
3146463 agaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagttactgtaatct 3146562  T
267 cgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcat 323  Q
    | || ||| | ||||||||| |||| ||  |||||||| | | ||| ||||||||||    
3146563 cattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcat 3146619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 8666680 - 8666772
Alignment:
232 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatc 324  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||| |  ||| |||||||| |||||||||||||||    
8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatc 8666772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
67 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 166  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
167 aggaatttctcatcttca 184  Q
    ||||||||||||||||||    
8646076 aggaatttctcatcttca 8646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 13334382 - 13334180
Alignment:
122 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaa 221  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||       ||    
13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaa 13334283  T
222 tttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 321  Q
    ||||  |   ||| ||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| ||| |||| ||| ||||||||    
13334282 tttctaacattgataacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttc 13334183  T
322 atc 324  Q
    |||    
13334182 atc 13334180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
73 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 172  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
173 ttctcatcttca 184  Q
    |||||| |||||    
8640664 ttctcagcttca 8640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 10495388 - 10495186
Alignment:
122 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaa 221  Q
    |||||||||||   |||||||||| |||||||||  |||||||||| |||||||  ||||||  || | |||| ||  ||||||| |||||       ||    
10495388 ttgtaaacacaagaatctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaa 10495289  T
222 tttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttc 321  Q
    ||||  |   ||||||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| |||||||| ||| ||||||||    
10495288 tttctaacattgacaacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttc 10495189  T
322 atc 324  Q
    |||    
10495188 atc 10495186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 6788775 - 6788865
Alignment:
234 acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatc 324  Q
    ||||||||||||||| ||||||||| || ||||| ||  ||||||| |||||| ||||  |  ||||||| ||||  ||||||||||||||    
6788775 acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatc 6788865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 17259498 - 17259587
Alignment:
236 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcg 325  Q
    |||||| ||||||||||||||||||| ||||| ||  || ||||||||||| | ||| |  ||||||| ||||  |||||||||| ||||    
17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcg 17259587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 30774290 - 30774602
Alignment:
9 gattattcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcag 108  Q
    |||||||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| ||    
30774290 gattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatctttag 30774389  T
109 agcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttga 208  Q
    | |||| |||||||||||||  |||  |||||||||||||||||||   | |||||||||||||||||||||||||||||| || ||    |||||||||    
30774390 accattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttga 30774489  T
209 atcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtca 308  Q
    ||||       |||||| | |   || |||||||||||||| |||||||| |||||||| ||  |||||||||||||| ||||| |  |||||||| |||    
30774490 atcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggatttttccatagcagaaacattca 30774589  T
309 tgataccattttc 321  Q
      |||||||||||    
30774590 gtataccattttc 30774602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 267
Target Start/End: Complemental strand, 16663051 - 16662867
Alignment:
83 tttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 182  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
16663051 tttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatctt 16662952  T
183 cagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctc 267  Q
    ||||| | || ||||  |||||||||||||       ||||||   |   || ||||||||||||||||||||||| ||||||||    
16662951 cagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgatctc 16662867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 16658427 - 16658334
Alignment:
232 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcg 325  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||| || || |||  ||||||  |||||||||| | ||||||||||||||||    
16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcg 16658334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
232 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 281  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
73 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 172  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
173 ttctcatctt 182  Q
    ||||||||||    
43744018 ttctcatctt 43744027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
69 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 167  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
168 ggaatttctcat 179  Q
    | ||||||||||    
43445883 gaaatttctcat 43445894  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
94 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 182  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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