View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_91 (Length: 340)
Name: NF15941_low_91
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_91 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 40538993 - 40539317
Alignment:
| Q |
18 |
ttttatacatcatatgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctctgcttgagtggttatcttatctactctct |
117 |
Q |
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| T |
40538993 |
ttttatacatcatgtgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctctgcttgagtggttatcttatctactctct |
40539092 |
T |
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| Q |
118 |
tat--ctctttttggtttctttaaagtctagttttgagtgatcttgtaatttattttgtatggactcacctaggaaaggtgattttcctagttaagatta |
215 |
Q |
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| T |
40539093 |
tatttctctttttggtttctttaaagtctagttttgagtgatcttgtaatttattttgtatggactcacctaggaaaggtgattttcctagttaagatta |
40539192 |
T |
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| Q |
216 |
agtgagagtagttgttaatgtgagagataagaggaataaattagacttaattacactttaatcccctattttatcaaactcgcgaaaacagcccactttt |
315 |
Q |
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| T |
40539193 |
agtgagagtagttgttaatgtgagagatgagaggaataaactaggcttaattacactttaatcccctattttatcaaactcgcgaaaacagcccactttt |
40539292 |
T |
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| Q |
316 |
ttaaaatcgaacttctagtccctct |
340 |
Q |
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| T |
40539293 |
ttaaaatcgaacttctagtccctct |
40539317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 40535593 - 40535675
Alignment:
| Q |
26 |
atcatatgatagacatgtaaagattttaatatagatttgtagtagtgaaaagttaaaatgctctgcttgagtggttatcttat |
108 |
Q |
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| T |
40535593 |
atcatatgataagcatgtaaagattctaatatacatttgtggtagtgaaaaattaaaatgctctgcttgagtggttgtcttat |
40535675 |
T |
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