View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_92 (Length: 331)

Name: NF15941_low_92
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_92
NF15941_low_92
[»] chr3 (1 HSPs)
chr3 (19-314)||(26617845-26618140)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 26617845 - 26618140
Alignment:
Q  19 gctttaacatcacatggcctagtaatatatcatatgcttttaatagttattatcaggagcatgatcagaaagctgaaagttgcgactttggggggcttgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617845 gctttaacatcacatggcctagtaatatatcatatgcttttaatagttattatcaggagcatgatcagaaagctgaaagttgcgactttggggggcttgg 26617944  T
Q  119 attaatcacaactgttgatccgtcagatgatcgttgcaggtttccgattgagattcacacttctaatgtagaactttacagggtgtgtagttttcagtgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617945 attaatcacaactgttgatccgtcagatgatcgttgcaggtttccgattgagattcacacttctaatgtagaactttacagggtgtgtagttttcagtgg 26618044  T
Q  219 ttgattttactagtaacaatcctcttggcatctttggaggtttgacttaagtaaattttaggatcatttttgcagataatttactgcattaatttt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26618045 ttgattttactagtaacaatcctcttggcatctttggaggtttgacttaagtaaattttaggatcatttttgcagataatttactgcattaatttt 26618140  T

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