View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_low_97 (Length: 328)
Name: NF15941_low_97
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_97 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 17831356 - 17831668
Alignment:
| Q |
1 |
acaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttctctctcccttcatcaacaatgcttcttctgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
17831356 |
acaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatctttcgtcgtttctctctcccttcatcgacgatgcttcttctgtt |
17831455 |
T |
|
| Q |
101 |
gctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttacccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831456 |
gctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttacccttt |
17831555 |
T |
|
| Q |
201 |
ctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcactattctcagttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17831556 |
ctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcattattctcagttta |
17831655 |
T |
|
| Q |
301 |
tctccctctccaa |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17831656 |
tctccctctccaa |
17831668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 7135411 - 7135702
Alignment:
| Q |
1 |
acaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttctctctcccttcatcaacaatgcttcttctgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135411 |
acaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatcttccgtcgtttctctctcccttcatcaacaatgcttcttctgtt |
7135510 |
T |
|
| Q |
101 |
gctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttacccttt |
200 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135511 |
gctaaatctcaaacatccatcatacttaatgctctattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtt--------- |
7135601 |
T |
|
| Q |
201 |
ctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcactattctcagttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7135602 |
------------ttttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcactattctcattttt |
7135689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 52525515 - 52525386
Alignment:
| Q |
162 |
ttttgtgaattttctctcaaggtaatagttttaccctttctatg--aattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctag |
259 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
52525515 |
ttttgtgaattttctctcaaggtaatcgttttaccctttctatagaaattgaatttcgtttctctgaatttcagttctcagtttcactttcatcccctag |
52525416 |
T |
|
| Q |
260 |
aatccttatggagtcaatcattcttcacta |
289 |
Q |
| |
|
|| | |||||||||||||||||||| |||| |
|
|
| T |
52525415 |
aacctttatggagtcaatcattctttacta |
52525386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 22292316 - 22292156
Alignment:
| Q |
60 |
catcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgtt |
159 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||| | |||||| ||||| | |||||||| |||||||||| | ||||| | |||||||||||| | |
|
|
| T |
22292316 |
catcgttgctctctccgttcatcaacaaagcttctcccgttgctgaatctaagacatccattatgcttaatgctcccttccaccactgttcagatttgct |
22292217 |
T |
|
| Q |
160 |
gattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
|||||| ||| |||||||||||||||| | ||| ||||||||||| |||||||| ||||| |
|
|
| T |
22292216 |
aattttgcgaagtttctctcaaggtaatcgcttttccctttctatgtattgaattgtgttt |
22292156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 5658334 - 5658415
Alignment:
| Q |
139 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
5658334 |
ccatcgttgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
5658415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 14677558 - 14677485
Alignment:
| Q |
146 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
219 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
14677558 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
14677485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 31100415 - 31100334
Alignment:
| Q |
139 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
31100415 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagctttttcttttctatgaattgaattgtgttt |
31100334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
| Q |
140 |
catcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
|||||||||||| ||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
11176 |
catcgttgttcaaatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
11096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 10093043 - 10093117
Alignment:
| Q |
146 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
10093043 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
10093117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 33044989 - 33044908
Alignment:
| Q |
139 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
33044989 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccttttctatgaattgaattgtgttt |
33044908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 35639 - 35719
Alignment:
| Q |
139 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
219 |
Q |
| |
|
|||||| |||||||||||| | |||||| || ||| |||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
35639 |
ccatcgctgttcagatttgctaattttgcaaagtttatctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
35719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 37362273 - 37362214
Alignment:
| Q |
135 |
tattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtttta |
194 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| |||||||||||||||||| || |||||| |
|
|
| T |
37362273 |
tattccatcattgttcatatttgtttattttatgaattttctctcaaggttatcgtttta |
37362214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 17682380 - 17682425
Alignment:
| Q |
175 |
ctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
220 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
17682380 |
ctctcaaggtaatcgtttttccctttctatgaattgaattgtgttt |
17682425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University