View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15942_high_1 (Length: 643)
Name: NF15942_high_1
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15942_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Original strand, 44787387 - 44788013
Alignment:
| Q |
11 |
gtttggctagggtgtttactttgtttttcaggttattttcatgttcatataaaaacaaattgattaaaggggaagaaattatcattgttcataattaaat |
110 |
Q |
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| T |
44787387 |
gtttggttagggtgtttactttgtttttcaggttattttcatgttcatataaaaacaaattgattaaagggaaagaaattatcattgttcataattaaat |
44787486 |
T |
|
| Q |
111 |
gacaataaatgtttgttacttcacttccaaatttcgaaatgggattaattactatgtatgtaaagcttcttctaataataaaattaatgggatataaag- |
209 |
Q |
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| T |
44787487 |
gacaataaatgtttattacttcacttccaaatttcgaaatggg----attactatgtatgtaaagcttcttctaataataaaattaatgggatataaagt |
44787582 |
T |
|
| Q |
210 |
ttttcttttaaaaagaacaaatactataaagttgaacaatcttcttaaaaatagttaaacaaacaaaaatttactagtaacgggaacatatttggtataa |
309 |
Q |
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| T |
44787583 |
ttttcttttaaaaagaacaaatactataaagttgaacaatcttcttaaaaataattaaacaaac-aaaatttactagtaacgggaacatatttggtataa |
44787681 |
T |
|
| Q |
310 |
cgcccctagcnnnnnnnttgatcagtctatatgttagtagtttctctctctttgaaccagtcatttaatttcttcaattcttttaactctacctcaaatc |
409 |
Q |
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| T |
44787682 |
cgcccctagcaaaaaaattgatcagtctatatgttagtagtttctctctctttgaaccagtcctttaatttcttcaattcttttaactctacctcaaatt |
44787781 |
T |
|
| Q |
410 |
agttgaacaactccatccccttaaaatgctgaatcaactaa-----------actaaatcattgaatgtaatagcaaacgtaattgatgtttataataaa |
498 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
44787782 |
agttgaaccactcaatccccttaaaatgctgaatcaactaatttcacattttacaaagttattgaatgtaatagcaaacgtaattgatgtttataataaa |
44787881 |
T |
|
| Q |
499 |
ccttgaatgaaatgtaaggttacaaataaaacaactaaactaaatcattgcaatgagacaagttaaatgacaaagattcacatccttttacaactattta |
598 |
Q |
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| T |
44787882 |
ccttgaatgaaatgtaaggttacaaataaaacaactaaactaaatcattgcaatgagacaagttaaatgacaaagattcacatccttttacaactattta |
44787981 |
T |
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| Q |
599 |
taatttatcaacaacacaattatgagaattat |
630 |
Q |
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| T |
44787982 |
taatttatcaacaacacaattatgagaattat |
44788013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 614
Target Start/End: Complemental strand, 36681678 - 36681643
Alignment:
| Q |
579 |
catccttttacaactatttataatttatcaacaaca |
614 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
36681678 |
catccttttacaactatttataatttatcaagaaca |
36681643 |
T |
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