View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15942_high_7 (Length: 261)

Name: NF15942_high_7
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15942_high_7
NF15942_high_7
[»] chr6 (4 HSPs)
chr6 (15-244)||(8062248-8062466)
chr6 (110-233)||(15293072-15293198)
chr6 (111-238)||(24988168-24988299)
chr6 (185-223)||(10817069-10817107)
[»] chr8 (1 HSPs)
chr8 (110-233)||(40795229-40795354)
[»] chr7 (5 HSPs)
chr7 (110-233)||(48467293-48467414)
chr7 (110-143)||(38146570-38146603)
chr7 (110-169)||(15971303-15971362)
chr7 (110-170)||(287891-287951)
chr7 (177-237)||(15970723-15970783)
[»] chr1 (4 HSPs)
chr1 (110-239)||(50191320-50191452)
chr1 (110-167)||(24213502-24213559)
chr1 (177-233)||(5482056-5482112)
chr1 (180-220)||(27773048-27773088)
[»] chr5 (5 HSPs)
chr5 (110-233)||(5497894-5498020)
chr5 (186-233)||(11890235-11890282)
chr5 (180-238)||(37517076-37517134)
chr5 (181-238)||(19120585-19120642)
chr5 (110-143)||(19845670-19845703)
[»] chr4 (6 HSPs)
chr4 (110-220)||(8907522-8907635)
chr4 (185-238)||(8919039-8919092)
chr4 (110-233)||(12397882-12398008)
chr4 (177-221)||(4635229-4635273)
chr4 (181-221)||(13293668-13293708)
chr4 (117-169)||(31777941-31777993)
[»] chr2 (5 HSPs)
chr2 (113-233)||(22573592-22573715)
chr2 (110-166)||(38291486-38291542)
chr2 (186-233)||(13837207-13837254)
chr2 (115-170)||(38836976-38837031)
chr2 (110-170)||(22573782-22573842)
[»] chr3 (5 HSPs)
chr3 (177-238)||(27026365-27026426)
chr3 (115-170)||(33335922-33335977)
chr3 (187-234)||(47165118-47165165)
chr3 (177-221)||(635370-635414)
chr3 (110-170)||(35849824-35849883)
[»] scaffold0289 (1 HSPs)
scaffold0289 (112-170)||(11825-11883)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 8062466 - 8062248
Alignment:
Q  15 aaggaatataaatgactcacaaagtgtgtgtatatatagatcaagattaacactttatgcgtttttactaaacattgttgtgtttgatgagtaaaaataa 114  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  8062466 aaggaatataaatgactcacaaagtgtgtgtatata--gatcaagattaacactttatgcgtttttactaaacattgttgtgtttgatgagtaaa----- 8062374  T
Q  115 catatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccatatccaacagtcaaatttaaaaaatatgtattgagtaaa 214  Q
        |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||||    
T  8062373 ----tcaaatgattttagatttatgtataactttaaatgaatgatatatatgatatgactatatccaacagttaaatttgaaaaatatgtatcgagtaaa 8062278  T
Q  215 atgatatcgaacggtgtaatattaattaaa 244  Q
    ||||||||||| ||| ||||||||||||||    
T  8062277 atgatatcgaatggtataatattaattaaa 8062248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 15293072 - 15293198
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccat---atccaacagtcaaatttaaaaaatatgtat 206  Q
    ||||| ||||||||| ||||||||||| |||| || | ||  |||||||| |||||||||| | | |   ||||||| ||||||||||||||||||| ||    
T  15293072 aataatatatcaaattattttagatttttgtaaaaatatatgtgaatgatctatatgatattaacttatgatccaacggtcaaatttaaaaaatatgcat 15293171  T
Q  207 tgagtaaaatgatatcgaacggtgtaa 233  Q
     |||||||| ||||| || ||||||||    
T  15293172 cgagtaaaacgatattgagcggtgtaa 15293198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 24988168 - 24988299
Alignment:
Q  111 ataacatatcaaatgattttagatttgtgtataactttaaatgaatgat--atatatgatatgaccata---tccaacagtcaaatttaaaaaatatgta 205  Q
    |||||||||||||| ||||||||||| || | || |||| |||||||||  |||||||||||   ||||   | |||  |||||||||||||||||||||    
T  24988168 ataacatatcaaataattttagatttttgaaaaa-tttacatgaatgatttatatatgatatacacatacaattcaatggtcaaatttaaaaaatatgta 24988266  T
Q  206 ttgagtaaaatgatatcgaacggtgtaatatta 238  Q
    |  ||||||| ||||| || |||||||| ||||    
T  24988267 tcaagtaaaacgatattgagcggtgtaacatta 24988299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 10817107 - 10817069
Alignment:
Q  185 gtcaaatttaaaaaatatgtattgagtaaaatgatatcg 223  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  10817107 gtcaaatttaaaaaatatgtatcgagtaaaacgatatcg 10817069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 40795354 - 40795229
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgac---catatccaacagtcaaatttaaaaaatatgtat 206  Q
    |||||||||||||| |||||||||||| |||| || |||| ||||||||| |||||||||| ||   || ||||||| ||||||||| ||||||||||||    
T  40795354 aataacatatcaaacgattttagatttttgtaaaaatttacatgaatgatctatatgatataacttaca-atccaacggtcaaatttgaaaaatatgtat 40795256  T
Q  207 tgagtaaaatgatatcgaacggtgtaa 233  Q
     || ||||| ||||| || ||||||||    
T  40795255 cgaataaaacgatattgagcggtgtaa 40795229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 48467293 - 48467414
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccatatccaacagtcaaatttaaaaaatatgtattga 209  Q
    |||||||||| ||||||||||||||||  ||| || |||| |||||| || |||||||||| | | ||  ||||| |||||||| ||||||||||||  |    
T  48467293 aataacatataaaatgattttagattttcgtaaaattttacatgaataatctatatgatataaactta--caacaatcaaatttgaaaaatatgtatcaa 48467390  T
Q  210 gtaaaatgatatcgaacggtgtaa 233  Q
     ||||||||||| |||||||||||    
T  48467391 ttaaaatgatattgaacggtgtaa 48467414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 38146603 - 38146570
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtata 143  Q
    ||||||||||||||||||||||||||||||||||    
T  38146603 aataacatatcaaatgattttagatttgtgtata 38146570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 15971362 - 15971303
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgata 169  Q
    ||||||||||||||| |||||| ||||||||| ||||||| || ||| || |||||||||    
T  15971362 aataacatatcaaataattttatatttgtgtaaaactttacataaataatctatatgata 15971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 287891 - 287951
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    ||||||||||||||| |||||||||||  ||| || |||| ||||||||| ||| ||||||    
T  287891 aataacatatcaaataattttagattttcgtaaaaatttacatgaatgatctatgtgatat 287951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 15970783 - 15970723
Alignment:
Q  177 atccaacagtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaatatt 237  Q
    |||||| | |||||||  |||||||||||| |||||||| |||||  ||||||||||||||    
T  15970783 atccaaaaatcaaattataaaaatatgtatagagtaaaaggatattaaacggtgtaatatt 15970723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 50191452 - 50191320
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccat---atccaacagtcaaatttaaaaaatatgtat 206  Q
    ||||||||||||||| |||||| ||||  ||| || ||||  |||||||| |||||||||| | |||   |||| || ||||||||| ||||||||| ||    
T  50191452 aataacatatcaaataattttaaattttcgtaaaaatttacgtgaatgatctatatgatataaacatacaatcctactgtcaaatttgaaaaatatgcat 50191353  T
Q  207 tgagtaaaatgatatcgaacggtgtaatattaa 239  Q
     |||||||| |||||  |||||||||| |||||    
T  50191352 cgagtaaaacgatattaaacggtgtaacattaa 50191320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 24213502 - 24213559
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatga 167  Q
    |||||||||||||||||||||| |||| | || || |||| ||||||||| |||||||    
T  24213502 aataacatatcaaatgattttaaatttttataaaaatttacatgaatgatctatatga 24213559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 5482112 - 5482056
Alignment:
Q  177 atccaacagtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaa 233  Q
    |||||||| | |||||| ||||||||| || |||||||||||||| || ||||||||    
T  5482112 atccaacaattaaatttgaaaaatatggatagagtaaaatgatattgagcggtgtaa 5482056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 27773048 - 27773088
Alignment:
Q  180 caacagtcaaatttaaaaaatatgtattgagtaaaatgata 220  Q
    ||||| |||||||| |||||||||||| |||||||||||||    
T  27773048 caacaatcaaatttgaaaaatatgtatcgagtaaaatgata 27773088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 5497894 - 5498020
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgacc---atatccaacagtcaaatttaaaaaatatgtat 206  Q
    ||||||||||||||||||||||||||| | || || ||||  ||||| || |||||||||| | |    | |||||| ||||||||| ||||||||||||    
T  5497894 aataacatatcaaatgattttagatttttataaaaatttatgtgaatcatctatatgatataaacttgttctccaacggtcaaattttaaaaatatgtat 5497993  T
Q  207 tgagtaaaatgatatcgaacggtgtaa 233  Q
     ||||||||  |||| || ||||||||    
T  5497994 cgagtaaaacaatattgagcggtgtaa 5498020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 11890235 - 11890282
Alignment:
Q  186 tcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaa 233  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  11890235 tcaaatttagaaaatatgtatcgagtaaaatgatattaaacggtgtaa 11890282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 37517134 - 37517076
Alignment:
Q  180 caacagtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaatatta 238  Q
    |||| ||||| ||||||||||||| || |||||||| ||||| ||||||||||| ||||    
T  37517134 caacggtcaattttaaaaaatatgcatcgagtaaaacgatattgaacggtgtaacatta 37517076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 19120585 - 19120642
Alignment:
Q  181 aacagtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaatatta 238  Q
    ||||||||||| ||||||||||| || |  |||||| |||| ||||||||||||||||    
T  19120585 aacagtcaaatataaaaaatatgaataggataaaataatattgaacggtgtaatatta 19120642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 19845703 - 19845670
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtata 143  Q
    ||||||||| ||||||||||||||||||||||||    
T  19845703 aataacataccaaatgattttagatttgtgtata 19845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 8907522 - 8907635
Alignment:
Q  110 aataacatatcaaatgattttag-atttgtgtataactttaaatgaatgatatatatgatatgaccatatc--caacagtcaaatttaaaaaatatgtat 206  Q
    |||||||||||||||||||||   |||| | || ||  ||| ||||||||| |||||||||| | | |||   |||| ||||||||||||||| ||||||    
T  8907522 aataacatatcaaatgatttttttatttatataaaatattacatgaatgatctatatgatataaacttataatcaacggtcaaatttaaaaaacatgtat 8907621  T
Q  207 tgagtaaaatgata 220  Q
    ||||||||||||||    
T  8907622 tgagtaaaatgata 8907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 8919039 - 8919092
Alignment:
Q  185 gtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaatatta 238  Q
    |||||||||||||||| ||||| || ||||||||||| |||| |||||||||||    
T  8919039 gtcaaatttaaaaaatttgtatcgactaaaatgatattgaacagtgtaatatta 8919092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 12398008 - 12397882
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccat---atccaacagtcaaatttaaaaaatatgtat 206  Q
    |||||||||||||||||||||||||||  ||| || ||||  |||||||| ||| |||||| | | |   |||||||  |||||||||||||||||  ||    
T  12398008 aataacatatcaaatgattttagattttcgtaaaaatttacgtgaatgatctatgtgatataaacttacaatccaacgatcaaatttaaaaaatatacat 12397909  T
Q  207 tgagtaaaatgatatcgaacggtgtaa 233  Q
     ||||||||  |||| || ||||||||    
T  12397908 cgagtaaaacaatattgagcggtgtaa 12397882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 4635229 - 4635273
Alignment:
Q  177 atccaacagtcaaatttaaaaaatatgtattgagtaaaatgatat 221  Q
    ||||||| |||||||||||||||||| ||| ||||||||| ||||    
T  4635229 atccaacggtcaaatttaaaaaatatatatcgagtaaaattatat 4635273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 13293708 - 13293668
Alignment:
Q  181 aacagtcaaatttaaaaaatatgtattgagtaaaatgatat 221  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  13293708 aacagtcaaatttgaaaaatatgaatagagtaaaatgatat 13293668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 31777941 - 31777993
Alignment:
Q  117 tatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgata 169  Q
    |||||||||||||||||||| |||| || |||| || |||||| |||||||||    
T  31777941 tatcaaatgattttagatttttgtaaaaatttacataaatgatctatatgata 31777993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 22573715 - 22573592
Alignment:
Q  113 aacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatatgaccat---atccaacagtcaaatttaaaaaatatgtat-tg 208  Q
    |||||||||||||||||||||||||| || || |||| ||| | ||| |||||||||| | | |   ||| ||| ||||||||||||||||||  || ||    
T  22573715 aacatatcaaatgattttagatttgtataaaaatttacatggacgatctatatgatattaacttacaatctaacggtcaaatttaaaaaatattaatctg 22573616  T
Q  209 agtaaaatgatatcgaacggtgtaa 233  Q
    | ||||||||||| |||||||||||    
T  22573615 a-taaaatgatattgaacggtgtaa 22573592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 38291542 - 38291486
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatg 166  Q
    ||||||||||||||||| |||||||||||||| || |||| ||  ||||||||||||    
T  38291542 aataacatatcaaatgaatttagatttgtgtaaaattttacatagatgatatatatg 38291486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 13837254 - 13837207
Alignment:
Q  186 tcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaa 233  Q
    |||||||| ||||||||| || |||||||||||||| |||||||||||    
T  13837254 tcaaatttgaaaaatatgcatcgagtaaaatgatattgaacggtgtaa 13837207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 38837031 - 38836976
Alignment:
Q  115 catatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    ||||| |||||||||||||| |||||| || |||||||| ||||| ||||||||||    
T  38837031 catattaaatgattttagatctgtgtaaaaatttaaatggatgatctatatgatat 38836976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 22573782 - 22573842
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    ||||||||| |||||||||||| |||||| || || |||| ||| ||||| ||||||||||    
T  22573782 aataacataacaaatgattttatatttgtataaaaatttacatggatgatctatatgatat 22573842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 27026426 - 27026365
Alignment:
Q  177 atccaacagtcaaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaatatta 238  Q
    ||||||| ||||||||| ||||||||| ||||||||||| ||||| || |||||||| ||||    
T  27026426 atccaacggtcaaatttgaaaaatatgcattgagtaaaacgatattgagcggtgtaacatta 27026365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 33335977 - 33335922
Alignment:
Q  115 catatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    |||||||||||||||||||||||| || || |||| ||| ||||| ||||||||||    
T  33335977 catatcaaatgattttagatttgtataaaattttacatgcatgatctatatgatat 33335922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 47165165 - 47165118
Alignment:
Q  187 caaatttaaaaaatatgtattgagtaaaatgatatcgaacggtgtaat 234  Q
    ||||||||||||||||| |||||||||||| |||| ||||||| ||||    
T  47165165 caaatttaaaaaatatgaattgagtaaaataatattgaacggtctaat 47165118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 635370 - 635414
Alignment:
Q  177 atccaacagtcaaatttaaaaaatatgtattgagtaaaatgatat 221  Q
    |||||||| | ||||||||||||||| ||| ||||||||||||||    
T  635370 atccaacaattaaatttaaaaaatatatatcgagtaaaatgatat 635414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 35849883 - 35849824
Alignment:
Q  110 aataacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    ||||||||||||||| |||||||||||||||| || |||| |||||| || | ||||||||    
T  35849883 aataacatatcaaat-attttagatttgtgtaaaattttacatgaataatttgtatgatat 35849824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 11825 - 11883
Alignment:
Q  112 taacatatcaaatgattttagatttgtgtataactttaaatgaatgatatatatgatat 170  Q
    |||||||||||||||||||||||||||||| || ||||  || ||| | ||||||||||    
T  11825 taacatatcaaatgattttagatttgtgtaaaagtttacctggatgttctatatgatat 11883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University