View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15942_low_2 (Length: 507)
Name: NF15942_low_2
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15942_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 34972576 - 34973067
Alignment:
| Q |
1 |
ttatttattttgatgagtcctatggtttatgtttataactttattatggttttgtggactacttgtgtgtttgcagggttgttcatggcattgcaaccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972576 |
ttatttattttgatgagtcctatggtttatgtttataactttattatggttttgtggactacttgtgtgtttgcagggttgttcatggcattgcaaccaa |
34972675 |
T |
|
| Q |
101 |
ggattattgcttgtggaaacaccgttgcttctttcgcgatggcggttcgcttccttaccggccctgctgtcatggctttttcttcatttgttgtaggact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972676 |
ggattattgcttgtggaaacaccgttgcttctttcgcgatggcggttcgcttccttaccggccctgctgtcatggctttttcttcatttgttgtaggact |
34972775 |
T |
|
| Q |
201 |
caggggagttctgttgcacattgctattgtacaggtactaatagacacaaccataagtttctttatatattttcttgtatcccttgattcaatgaatgaa |
300 |
Q |
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| T |
34972776 |
caggggagttctgttgcacattgctattgtacaggtactaatagacacaaccataagtttctttatatattttcttgtatcccttgattcaatgaatgaa |
34972875 |
T |
|
| Q |
301 |
tgtgtgttttgtgtatttctaggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattcttagcactggg |
400 |
Q |
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| T |
34972876 |
tgtgtgttttgtgtatttctaggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattcttagcactggg |
34972975 |
T |
|
| Q |
401 |
tttgaattcttattccttttattgattattacttcaaaaacacactagcacctagcacctagattcattaatgttaaaaaagattttgtttt |
492 |
Q |
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| T |
34972976 |
tttgaattcttattccttttattgattattacttcaaaaacacactagcacctagcacctagattcattaatgttaaaaaagattttgtttt |
34973067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 33104992 - 33105065
Alignment:
| Q |
320 |
taggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattcttag |
393 |
Q |
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| T |
33104992 |
taggctgcacttcctcaagggattgttccatttgtgtttgccaaggagtacaatgttcatccagccattcttag |
33105065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 52712672 - 52712724
Alignment:
| Q |
321 |
aggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaat |
373 |
Q |
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| T |
52712672 |
aggctgctcttccccaagctatcgttccctttgtgtttgccaaagaatacaat |
52712724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 52718332 - 52718384
Alignment:
| Q |
321 |
aggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaat |
373 |
Q |
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| T |
52718332 |
aggctgcacttccccaaggtattgttccctttgtgtttgccaaagaatacaat |
52718384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 45363522 - 45363583
Alignment:
| Q |
329 |
cttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattct |
390 |
Q |
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| T |
45363522 |
cttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattct |
45363583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 10835046 - 10834973
Alignment:
| Q |
320 |
taggctgctcttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattcttag |
393 |
Q |
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| T |
10835046 |
taggctgcacttccacaagggattgttccatttgtgtttgcaaaagagtacaatgttcatccagccattcttag |
10834973 |
T |
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