View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15942_low_3 (Length: 466)
Name: NF15942_low_3
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15942_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 51069759 - 51069324
Alignment:
| Q |
21 |
tttattcaatttgatgcgaaattcttgtcgtgatgcactgtgtgttttgcgatctatgtagtgaactacgaagtgttagaagaaagttattgttggaagc |
120 |
Q |
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| T |
51069759 |
tttattcaatttgatgcgaaattcttgtcgtgatga---gtgtgttttgcgatctatgtagtgaactacgaagtgttagaagaaagttattgttggaagc |
51069663 |
T |
|
| Q |
121 |
ccttgccaatgaactcccaaatagaaccattaggtacatgtcaaaagtcgttgctatagagaaatctggattctttaaaatactacatcttgttgatgga |
220 |
Q |
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||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51069662 |
ccttggcaatgaacttccaaatagcaccattaggtacatgtcaaaagtcgttgctatagaggaatctggattctttaaaatactacatcttgttgatgga |
51069563 |
T |
|
| Q |
221 |
acaaccatcaaaacaaaggtaaacaatatgtgtgacatgacataatgactatcaaccttgattttgctttaactgatacatgactgtaatttgtaattta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51069562 |
acaaccatcaaaacaaaggtaaacaatatgtgtgacatgacataatgactatcaaccttgattttgctttaactgatacatgagtgtaatttgtaattta |
51069463 |
T |
|
| Q |
321 |
aaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggccagttatacagggagatatggaattaggggtttt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51069462 |
aaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggccagttatacagggagatatggaatcaggggtttc |
51069363 |
T |
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| Q |
421 |
gcagagttggaatacaatcacagttttgagcctatgctt |
459 |
Q |
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| T |
51069362 |
gcagagttggaaaacaatcacagttttgagcctatgctt |
51069324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 51031539 - 51031390
Alignment:
| Q |
93 |
gtgttagaagaaagttattgttggaagcccttgccaatgaactcccaaatagaaccattaggtacatgtcaaaagtcgttgctatagagaaatctggatt |
192 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| || |||||||| ||| ||||||| || |
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| T |
51031539 |
gtgttaaaaggaaattattgttggaagcccttgccaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggttt |
51031440 |
T |
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| Q |
193 |
ctttaaaatactacatcttgttgatggaacaaccatcaaaacaaaggtaa |
242 |
Q |
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| T |
51031439 |
ttccaaaatactacatcttgttgatggaacaaccatcaaaaccaaggtaa |
51031390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 51064281 - 51064138
Alignment:
| Q |
99 |
gaagaaagttattgttggaagcccttgccaatgaactcccaaatagaaccattaggtacatgtcaaaagtcgttgctatagagaaatctggattctttaa |
198 |
Q |
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||||||| |||||||||||||||||||| |||||||| || ||| | |||||||||||||||||||| || |||||||| ||| ||||||| || | || |
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| T |
51064281 |
gaagaaatttattgttggaagcccttgcaaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaa |
51064182 |
T |
|
| Q |
199 |
aatactacatcttgttgatggaacaaccatcaaaacaaaggtaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51064181 |
aatactacatcttgttgatggaacaaccatcaaaaccaaggtaa |
51064138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 93 - 249
Target Start/End: Original strand, 40616501 - 40616657
Alignment:
| Q |
93 |
gtgttagaagaaagttattgttggaagcccttgccaatgaactcccaaatagaaccattaggtacatgtcaaaagtcgttgctatagagaaatctggatt |
192 |
Q |
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|||||||||| |||||||||||||||||||||| | ||| || |||| | | || ||||||||| ||||||| || |||||||| || ||||||| || |
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| T |
40616501 |
gtgttagaaggcagttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggttt |
40616600 |
T |
|
| Q |
193 |
ctttaaaatactacatcttgttgatggaacaaccatcaaaacaaaggtaaacaatat |
249 |
Q |
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|||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
40616601 |
ctttaagatactccatcttgccgatggaacaaccatcaaaaccaaggtaaacaatat |
40616657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 51035716 - 51035581
Alignment:
| Q |
107 |
ttattgttggaagcccttgccaatgaactcccaaatagaaccattaggtacatgtcaaaagtcgttgctatagagaaatctggattctttaaaatactac |
206 |
Q |
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||||||||||||||||||||||||||||| || | | | |||||||| ||||||||||| || |||||||| | ||||||| || | ||| ||||| | |
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| T |
51035716 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagatactcc |
51035617 |
T |
|
| Q |
207 |
atcttgttgatggaacaaccatcaaaacaaaggtaa |
242 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||| |
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| T |
51035616 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
51035581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 406
Target Start/End: Original strand, 40616746 - 40616837
Alignment:
| Q |
315 |
aatttaaaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggccagttatacagggagatatg |
406 |
Q |
| |
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|||||||||||||||||| || ||||||||| | |||||| |||| ||||||||| ||||||||||||||||| ||| ||||||||||||| |
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| T |
40616746 |
aatttaaaaggtattgatcgggtgtgatggagttaactctttggtagcaaagtggctaggcttcaaggaggcctcttacacagggagatatg |
40616837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 51035492 - 51035425
Alignment:
| Q |
320 |
aaaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggcc |
387 |
Q |
| |
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||||||||||||| || ||||||||| | ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
51035492 |
aaaaggtattgattgggtgtgatggagtaaactctgtggtagcaaaatggttaggcttcaaggaggcc |
51035425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 429
Target Start/End: Complemental strand, 51031251 - 51031142
Alignment:
| Q |
320 |
aaaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggccagttatacagggagatatggaattaggggttt |
419 |
Q |
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||||||||||||| || ||||||||| | ||||||||||| ||||| |||||||| |||||||| ||| || ||||||||||||| || || |||| |
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| T |
51031251 |
aaaaggtattgattgggtgtgatggagtaaactctgtggtggcaaaatggttagggttcaaggaagcctcatacacagggagatatgcaaccagaggtta |
51031152 |
T |
|
| Q |
420 |
tgcagagttg |
429 |
Q |
| |
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|||||||||| |
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| T |
51031151 |
tgcagagttg |
51031142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 429
Target Start/End: Complemental strand, 51064003 - 51063894
Alignment:
| Q |
320 |
aaaaggtattgataggatgtgatggaatcaactctgtggttgcaaagtggttaggcttcaaggaggccagttatacagggagatatggaattaggggttt |
419 |
Q |
| |
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||||||||||||| || ||||||||| | ||||||||||| ||||| |||||||| |||||||| ||| || ||||||||||||| || || |||| |
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| T |
51064003 |
aaaaggtattgattgggtgtgatggagtaaactctgtggtggcaaaatggttagggttcaaggaagcctcatacacagggagatatgcaaccagaggtta |
51063904 |
T |
|
| Q |
420 |
tgcagagttg |
429 |
Q |
| |
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|||||||||| |
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| T |
51063903 |
tgcagagttg |
51063894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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