View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15942_low_6 (Length: 351)
Name: NF15942_low_6
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15942_low_6 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 47544028 - 47544365
Alignment:
| Q |
1 |
ccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggaga |
100 |
Q |
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| T |
47544028 |
ccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatagaga |
47544127 |
T |
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| Q |
101 |
caataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtg |
200 |
Q |
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| T |
47544128 |
caataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtg |
47544227 |
T |
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| Q |
201 |
tgtttacttaaattgcttatccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagat |
300 |
Q |
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| T |
47544228 |
tgtttgcttaaatcgcttatccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagat |
47544327 |
T |
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| Q |
301 |
agaaagatagctaagaatactgagcttgaaacacaggt |
338 |
Q |
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| T |
47544328 |
agaaagatagctaagaatactgagcttgaaacacaggt |
47544365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 10281776 - 10281666
Alignment:
| Q |
142 |
attctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttacttaaattgcttatccaaacatggtcttaatgcct |
241 |
Q |
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| T |
10281776 |
attctaggagttcaatgtgtttctcataggacatgataaacgcatgtgctat-----tttgtttaattaaattgtttatccaaacatgatcttaatatct |
10281682 |
T |
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| Q |
242 |
tatgacattgcctttt |
257 |
Q |
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| T |
10281681 |
aatgacactgcctttt |
10281666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 47527689 - 47527761
Alignment:
| Q |
28 |
caatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaa |
103 |
Q |
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| T |
47527689 |
caatcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaatggagacaa |
47527761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
| Q |
234 |
taatgccttatgacattgccttttcaggatgctccaaaatagggaatcagcta |
286 |
Q |
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| T |
47528128 |
taatgcctaatgacattgccttt-caggatgctctctaatagggaatcagcta |
47528179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 101322 - 101431
Alignment:
| Q |
11 |
gaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataaccct |
110 |
Q |
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| T |
101322 |
gaaacctgttgttacaac---caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaagaacgct |
101418 |
T |
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| Q |
111 |
tccgatgcaaaac |
123 |
Q |
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| T |
101419 |
tctgatgcaaaac |
101431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 101435 - 101466
Alignment:
| Q |
142 |
attctaggagttcaatatgtttcacatacgac |
173 |
Q |
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| T |
101435 |
attctaggagttcaatatgtttcacatacgac |
101466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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