View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15942_low_7 (Length: 316)
Name: NF15942_low_7
Description: NF15942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15942_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 50 - 309
Target Start/End: Original strand, 25784193 - 25784452
Alignment:
| Q |
50 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcaattagagaaggtattggtcattcgaatggagcgccagag |
149 |
Q |
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| T |
25784193 |
tttctagctgaccacaactcctcccaactgcgttgtgacaaatcttttccatataagcgcgattagagcaggtatcggtcattcgaatggagcgccacat |
25784292 |
T |
|
| Q |
150 |
gaaaggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcaca |
249 |
Q |
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| T |
25784293 |
gaaaggatctttacatatattccaccatagagggcacacttgacatacacttgtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcaca |
25784392 |
T |
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| Q |
250 |
tctcttggaagttcaagccaatttggttcatttgtgttttcagtttctacttctggttct |
309 |
Q |
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| T |
25784393 |
tctcttggaagttcaagccaatttggttcatttgtgttttcagtttctacttctggttct |
25784452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 14934529 - 14934638
Alignment:
| Q |
166 |
atattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcacatctcttggaagttcaa |
265 |
Q |
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| T |
14934529 |
atattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatgtttgcagtcacatctcttggaagttcaa |
14934628 |
T |
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| Q |
266 |
gccaatttgg |
275 |
Q |
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| T |
14934629 |
gccaatttgg |
14934638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 16955679 - 16955801
Alignment:
| Q |
153 |
aggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaaatgttggttgtcacatct |
252 |
Q |
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|||||| || || ||||||||||||| |||||||||||||||||| || || || | || | |||| |||||| ||| |||||| ||| || |||| |
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| T |
16955679 |
aggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttattgccaaatct |
16955778 |
T |
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| Q |
253 |
cttggaagttcaagccaatttgg |
275 |
Q |
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|||| ||||||||||||||||| |
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| T |
16955779 |
tttggtagttcaagccaatttgg |
16955801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 29721090 - 29721037
Alignment:
| Q |
222 |
aagccttcggaaaatgttggttgtcacatctcttggaagttcaagccaatttgg |
275 |
Q |
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| T |
29721090 |
aagccttgggagtatgttggttgtaaggtctcttggaagttcaagccaatttgg |
29721037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 29856923 - 29856870
Alignment:
| Q |
142 |
cgccagaggaaaggatctttacatatattccaccatagagggcacacttgacat |
195 |
Q |
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| T |
29856923 |
cgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacat |
29856870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 30227432 - 30227292
Alignment:
| Q |
135 |
aatggagcgccagaggaaaggatctttacatatattccaccatagagggcacacttgacatactctagtaactacgtcgaaggtattaagccttcggaaa |
234 |
Q |
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| T |
30227432 |
aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaaga |
30227333 |
T |
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| Q |
235 |
atgttggttgtcacatctcttggaagttcaagccaatttgg |
275 |
Q |
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| T |
30227332 |
atgtttgttgtgatgtctctaggaagttcaagccaatttgg |
30227292 |
T |
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