View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15943_high_4 (Length: 282)

Name: NF15943_high_4
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15943_high_4
NF15943_high_4
[»] chr4 (10 HSPs)
chr4 (7-269)||(36424972-36425234)
chr4 (7-269)||(36410806-36411068)
chr4 (7-269)||(36416137-36416399)
chr4 (7-269)||(36396556-36396818)
chr4 (7-242)||(36403516-36403751)
chr4 (7-273)||(36368197-36368463)
chr4 (7-242)||(36386800-36387034)
chr4 (7-269)||(36432832-36433091)
chr4 (8-232)||(36372854-36373078)
chr4 (24-198)||(55676492-55676666)
[»] chr3 (2 HSPs)
chr3 (89-198)||(34712425-34712534)
chr3 (7-80)||(34712306-34712379)
[»] scaffold0534 (1 HSPs)
scaffold0534 (207-274)||(11045-11112)
[»] chr7 (1 HSPs)
chr7 (207-274)||(42772614-42772681)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36425234 - 36424972
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||    |||||| || ||||||||    
T  36425234 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatcactatttgcaacccaaacaacagtttggaaaagcaaatagtagtaccaaa 36425135  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36425134 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 36425035  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaaga 269  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  36425034 aatagttatggtatcagaagaacaagggcaaaaagataaggtgagacatagtagaatcaaaga 36424972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36411068 - 36410806
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||    |||||| || |||||| |    
T  36411068 ccattttggttgattgatagaattccagaagtgtcattgatgggagcatctctatttgcaacccaaacaacagtttggatcggcaaattgttgtaccaga 36410969  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36410968 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 36410869  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaaga 269  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  36410868 aatagttatggtatcagaagaacaagggcaaaaagataaggtgagacatagtagaatcaaaga 36410806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36416399 - 36416137
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||    |||||| || |||||| |    
T  36416399 ccattttggttgattgatagaattccagaagtgtcattgatgggagcatctctatttgcaacccaaacaacagtttggatcggcaaattgttgtaccaga 36416300  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416299 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 36416200  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaaga 269  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  36416199 aatagttatggtatcagaagaacaagggcaaaaagataaggtgagacatagtagaatcaaaga 36416137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36396818 - 36396556
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||    |||||| || |||||| |    
T  36396818 ccattttggttgattgatagaattccagaagtgtcattgatgggagcatctctatttgcaacccaaacaacagtttggatcggcaaattgttgtaccaga 36396719  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||     
T  36396718 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtc 36396619  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaaga 269  Q
    ||||| ||||||||||||||||||||  |||||||| || | ||||  |||||||||||||||    
T  36396618 aatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtagaatcaaaga 36396556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 36403751 - 36403516
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    ||||||||||| || |||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||  | |||||| || ||||||||    
T  36403751 ccatttgggtcaatggataaaatcccagaagtgtcattgatgggagcatctctgtttgcaacccaaacaacagtttggattggcaaattgtagtaccaaa 36403652  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| || |||||     
T  36403651 ttccaacatagcgagaggcggactttcctggagtgaagaatccaagagcaaaggttttagatttagaaacaagaagttcaccatctcttaaggttttgtc 36403552  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaaga 242  Q
     |||| ||||||||||||||||||||  ||||||||    
T  36403551 gatagatatggtatcagaagaacaagagcaaaaaga 36403516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 36368463 - 36368197
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||| | |||||||||||||||||||||||||||||||| |||| ||| || ||||||||||| ||||||||||||  | |||||| || |||||| |    
T  36368463 ccatttcgatcgattgatagaattccagaagtgtcattgattggagtatctctatttgcaacccaaacaacagtttggattggcaaattgttgtaccaga 36368364  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||| || | |     
T  36368363 ttccaacgtagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagatataagaatctcaccatctcttatgcgtgtatc 36368264  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaagaatta 273  Q
    |  || |||| ||||||||||||| | ||||||||| ||||| |||   |||||||||||| |||||    
T  36368263 agaagatatgatatcagaagaacaggaacaaaaagaaaaggcaagaaggagtagaatcaaataatta 36368197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 36387034 - 36386800
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||||||||||| |||| |||||| ||||| |  ||||| |||  ||  || ||||||||||| ||||||||||||  | |||||| || ||||||||    
T  36387034 ccatttgggtcgat-gataaaattccggaagtattgttgattggactatttctatttgcaacccaaacaacagtttggattggcaaattgtagtaccaaa 36386936  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | |||||||||    
T  36386935 ttccaacatagcgagatgttgattttcctggagtgaagaatccaagagcaaatgttttagatttagaaacaagaagttcaccatctctcaggggtttgtg 36386836  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaaga 242  Q
    ||||| ||||||||||||||||||||  ||||||||    
T  36386835 aatagatatggtatcagaagaacaagagcaaaaaga 36386800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 36433091 - 36432832
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||| |||| ||| || ||||||||||| ||||||||||||  |  ||||| || ||||||||    
T  36433091 ccatttgggttgattgatagaattccagaagtgtcattgattggagtatctctatttgcaacccaaacaacagtttggattgacaaattgtagtaccaaa 36432992  T
Q  107 ttccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtg 206  Q
    |||| ||||||||||| ||||| ||||||  || |||||||||||||| |||  |||||||||||||||| ||||| |||||||||||||  ||||||      
T  36432991 ttcctacatagcgagatgtggattttcctttagcgaagaatccaagagaaaacattttagatttagaaatcagaagctcaccatctcttaatggtttgac 36432892  T
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaaga 269  Q
    | ||| ||| ||||||||||||||||  |||||||   ||| ||||  |||||||||||||||    
T  36432891 agtagatatagtatcagaagaacaagagcaaaaag---aggtgagaagtagtagaatcaaaga 36432832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 36373078 - 36372854
Alignment:
Q  8 catttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaat 107  Q
    ||||||| ||||||||||||||||||||||| || ||||| |||  ||  || ||||||||||| ||||||||||||  | |||||| || |||||||||    
T  36373078 catttggatcgattgatagaattccagaagtatcgttgattggactatttctatttgcaacccaaacaacagtttggattggcaaattgttgtaccaaat 36372979  T
Q  108 tccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtga 207  Q
     |||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||  ||||| |||||||||||||| ||||||| |    
T  36372978 accaacatagcgagatgtggattttgctggagtgaagaatccaagagcaaaagttttggatttggaaacaagaagctcaccatctcttattggtttgtca 36372879  T
Q  208 atagttatggtatcagaagaacaag 232  Q
     ||| |||| |||||| ||||||||    
T  36372878 gtagatatgatatcagtagaacaag 36372854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 55676492 - 55676666
Alignment:
Q  24 tagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagtttggggttgcaaatcgtggtaccaaattccaacatagcgagag 123  Q
    |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||||| ||   | |||||| || |||||| |||||||| |  ||||||    
T  55676492 tagatttccagaagtgtcattgattggagcatctctatttgcaacccaaacaacagtgtgtattggcaaattgttgtaccagattccaacgtgacgagag 55676591  T
Q  124 gtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcaccatctcttatg 198  Q
     |||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||  ||||||||| |||||    
T  55676592 atggactttactggagtgaagaatccaagagcaaaggttttagatttagatataagaatctcaccatcttttatg 55676666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 34712425 - 34712534
Alignment:
Q  89 gcaaatcgtggtaccaaattccaacatagcgagaggtggactttcctggagtgaagaatccaagagcaaatgttttagatttagaaatgagaagttcacc 188  Q
    |||||| || |||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| || | ||  |||||    
T  34712425 gcaaattgttgtaccagattccaacgtagcgagaggtggactttactggagtgatgaatccaagagcaaaggttttagatttagatataaaaatctcacc 34712524  T
Q  189 atctcttatg 198  Q
    |||| |||||    
T  34712525 atcttttatg 34712534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 34712379 - 34712306
Alignment:
Q  7 ccatttgggtcgattgatagaattccagaagtgtcattgatgggagcatccctgtttgcaacccagacaacagt 80  Q
    |||||| |||| ||||||||||||||||||||||||||||| |||| ||| || ||||||||||| ||||||||    
T  34712379 ccattttggtcaattgatagaattccagaagtgtcattgattggagtatctctatttgcaacccaaacaacagt 34712306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 11045 - 11112
Alignment:
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaagaattat 274  Q
    ||||| ||||||||||||||||||||  |||||||| |||  ||||  ||||||||||||||| ||||    
T  11045 aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagttat 11112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 42772681 - 42772614
Alignment:
Q  207 aatagttatggtatcagaagaacaaggacaaaaagataaggcgagacatagtagaatcaaagaattat 274  Q
    ||||| ||||||||||||||||||||  |||||||| |||  ||||  ||||||||||||||| ||||    
T  42772681 aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagttat 42772614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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