View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15943_low_1 (Length: 603)
Name: NF15943_low_1
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15943_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 7539596 - 7539014
Alignment:
| Q |
1 |
gtcttaaagataattttccaaggaaataatttgatagataaccaagtaagaaacctatgttaatggaaagatctggtagagaagttagaaaacctctata |
100 |
Q |
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| T |
7539596 |
gtcttaaagataattttccaaggaaataatttgagagataaccaagtaagaaacctatgttaatggaaagatctggtagagaagttagaaaacctctata |
7539497 |
T |
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| Q |
101 |
agaaggagatgaaatttctgcactgtaaacagatactatgataagtgcaaaaccaacaccaaatcctgcaatgcatcttccaatcattaagattggaaaa |
200 |
Q |
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| T |
7539496 |
agaaggagatgaaatttctgcactgtaaacagatactatgataagtgcaaaaccaacaccaaatcctgcaatgcatcttccaatcattaagattggaaaa |
7539397 |
T |
|
| Q |
201 |
gatgaaccataccccattaaaattgagcctaagaagaagaatatcgacgatagcatgattgtgtagcgtcgacctatgtaatcggataatcttcctgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539396 |
gatgaaccataccccattaaaattgagcctaagaagaagaatatcgacgatagcatgattgtgtagcgtcgacctatgtaatcggataatcttcctgcaa |
7539297 |
T |
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| Q |
301 |
tcatgcatgctggtaatgcacatgcatttaagattcctgctagaagctgcacttgcatgtcactgatttcaagttcttcctttatgaataagagtgctcc |
400 |
Q |
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| T |
7539296 |
tcatgcatgctggtaatgcacatgcatttaagattcctgctagaagctgcacttgcatgtcactgatttcaagttcttcctttatgaataagagtgctcc |
7539197 |
T |
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| Q |
401 |
agccatcactgttgtaactaaaataaaaaatatttacctattagttgattttgcatagctattttatgccaaaaaatgcattttagacatatcatatcag |
500 |
Q |
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| T |
7539196 |
agccatcactgttgtaactaaaataaaaaatatttacctattagttgattttgcatagctattttatgccaaaaaatgcattttagacatatcatatcag |
7539097 |
T |
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| Q |
501 |
acnnnnnnncattactattattgttacattagattttatactttgtattaaattataatttttccaacattttcaacaattta |
583 |
Q |
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| T |
7539096 |
actttttttcattactattattgttacattagattttatactttgtattaaattataatttttccaacattttcaacaattta |
7539014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 54902586 - 54902548
Alignment:
| Q |
520 |
attgttacattagattttatactttgtattaaattataa |
558 |
Q |
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| T |
54902586 |
attgtaacattagattttataatttgtattaaattataa |
54902548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 46351627 - 46351579
Alignment:
| Q |
515 |
ctattattgttacattagattttatactttgtattaaattataattttt |
563 |
Q |
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| T |
46351627 |
ctattattattatattaaattttataatttggattaaattataattttt |
46351579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 557
Target Start/End: Original strand, 40449748 - 40449777
Alignment:
| Q |
528 |
attagattttatactttgtattaaattata |
557 |
Q |
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| T |
40449748 |
attagattttatactttgtattaaattata |
40449777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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