View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15943_low_2 (Length: 417)
Name: NF15943_low_2
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15943_low_2 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 41544503 - 41544107
Alignment:
| Q |
1 |
taaaagtgtgtctgatcaatgtatgtgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatataa |
100 |
Q |
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| T |
41544503 |
taaaagtgtgtctgatcaatgtatgcgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatataa |
41544404 |
T |
|
| Q |
101 |
caaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaatgttccctctcttgatattgggtctaagatagttcaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544403 |
caaacctgtttccaagaagtttgtgaagcctaataatcaaatcctcttcttcatctgaaatgttccctctcttgatattgggtctaagatagttcaacca |
41544304 |
T |
|
| Q |
201 |
tcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttactttggtttcaagtaacaacttttttcccctttcttttcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544303 |
tcttagcctgcaactctttccacacctattcaaacctgcaaacaaaattgcagcacttactttggtttcaagtaacaacttttttcccctttcttttcta |
41544204 |
T |
|
| Q |
301 |
aacttgtaaatttttcacttgtgacttgtgagtagtaataaattaaaagaataacttttgtcttatcacctgaattgtttgcaacagttttccatttctt |
400 |
Q |
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| T |
41544203 |
aacttgtaaatttttcacttgtgacttttgagtagtaa-----taaaagaataacttttgtcttatcacctgaattgtttgcaacagttttccatttctt |
41544109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 37807947 - 37807865
Alignment:
| Q |
164 |
tccctctcttgatattgggtctaagatagttcaaccatcttagcctgcaactctttccacacctattcaa-acctgcaaacaaa |
246 |
Q |
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| T |
37807947 |
tccctcttttgatatctggccttagatagttcaaccaccttagtctacaactcttcccacacct-ttcaagacctgcaaacaaa |
37807865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 2792051 - 2792089
Alignment:
| Q |
200 |
atcttagcctgcaactctttccacacctattcaaacctg |
238 |
Q |
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| T |
2792051 |
atcttagcctgcaactcttaccacacctattcaaccctg |
2792089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 5567 - 5600
Alignment:
| Q |
187 |
agatagttcaaccatcttagcctgcaactctttc |
220 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
5567 |
agatagttcaaccatcttagcctacaactctttc |
5600 |
T |
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