View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15943_low_4 (Length: 370)
Name: NF15943_low_4
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15943_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 22795558 - 22795915
Alignment:
| Q |
1 |
gatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795558 |
gatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataat |
22795657 |
T |
|
| Q |
101 |
ctagaaggtttttgcataatgacaaaattttatggtatttatttatatatgctatttgatgatacaggtttttgcaaggacctgaaactgatcctgcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22795658 |
ctagaaggtttttgcataatgacaaaattttatggtatttatttatatatgctatttgatgatacaggtttttgcaaggacccgaaactgatcctgcaac |
22795757 |
T |
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| Q |
201 |
agtgnnnnnnnttagacaggctattgacaatcaaacagaagttactgtgcagcttattaactatacaaagagtggtatgctttttagtattccaatgatg |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795758 |
agtgaaaaaaattagacaggctattgacaatcaaacagaagttactgtgcagcttattaactatacaaagagtggtatgctttttagtattccaatgatg |
22795857 |
T |
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| Q |
301 |
aaacttttacaag----atagtcaatgtcacactatgttattatctacaattcatttc |
354 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795858 |
aaacttttacaagatatatagtcaatgtcacactatgttattatctacaattcatttc |
22795915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40960682 - 40960742
Alignment:
| Q |
1 |
gatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggt |
61 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
40960682 |
gatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggt |
40960742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 40961037 - 40961148
Alignment:
| Q |
166 |
aggtttttgcaaggacctgaaactgatcctgcaacagtgnnnnnnnttagacaggctattgacaatcaaacagaagttactgtgcagcttattaactata |
265 |
Q |
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|||||| |||||||||| ||||||||||| ||||| ||| ||||| |||| |||||||| ||||| |||||||| ||||| || || || |||| |
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| T |
40961037 |
aggtttctgcaaggaccagaaactgatccagcaactgtgagaaaaattagagaggcaattgacaaccaaaccgaagttacagtgcaactgatcaattata |
40961136 |
T |
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| Q |
266 |
caaagagtggta |
277 |
Q |
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||| || ||||| |
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| T |
40961137 |
caaggactggta |
40961148 |
T |
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