View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15943_low_5 (Length: 361)
Name: NF15943_low_5
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15943_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 29562726 - 29562393
Alignment:
| Q |
17 |
aaatgtaagtgaaaaaa-gtaaccaccatgttttgcgttattgctttgcttctcaatccatctttagaatttcttatctgtttgattgccaatgccaaga |
115 |
Q |
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| T |
29562726 |
aaatgtaagtgaaaaaaagtaaccaccatgttttgcgttattgctttgcttctcaatccatctttagaatttcttatctgtttgattgccaatgccaaga |
29562627 |
T |
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| Q |
116 |
taatgtaaagtgaaaacatgtttttataagttatatttaatagagtgaaagctcaactccaatgagctatgtaatttaaatatagcgaatgtgatgaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29562626 |
taatgtaaagtgaaaacatgtttttataagttatattttatagagtgaaagttcaactccaatgagctatgtaatttaaatatagtgaatgtgatgaact |
29562527 |
T |
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| Q |
216 |
tcaaagattagtagttgattttgtccaaacatgccattcaaatactttttggtgttggtttctcatgaattttattgaactttgcaggtggagattctga |
315 |
Q |
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| T |
29562526 |
tcaaagattagtagttgattttgtccaaacatgccattcaaatactttttggtgttggtttctcatgaattttattgaactttgcaggtggagattctga |
29562427 |
T |
|
| Q |
316 |
gaaggaaaatggagggattgtcaaaggggatatt |
349 |
Q |
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| T |
29562426 |
gaaggaaaatggagggattgtcaaaggggatatt |
29562393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 5002466 - 5002347
Alignment:
| Q |
18 |
aatgtaagtgaaaaaagtaaccaccatgttttgcgttattgctttgcttctcaatccatctttagaatttcttatctgtttgattgccaatgccaagata |
117 |
Q |
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| T |
5002466 |
aatgtaagtgaaaaaagtaaccaccat-ttttgccttattcctttgcttctcaatccatctttagaatttcttatcagtttgattg------ccaagata |
5002374 |
T |
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| Q |
118 |
atgtaaagtgaaaacatgtttttataa |
144 |
Q |
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| T |
5002373 |
atgtaaagtgaaaacatgtttttataa |
5002347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 5002074 - 5002025
Alignment:
| Q |
300 |
caggtggagattctgagaaggaaaatggagggattgtcaaaggggatatt |
349 |
Q |
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| T |
5002074 |
caggtggagattctgagaaggaaaacggagggattgtcaaagggtatatt |
5002025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 5002163 - 5002112
Alignment:
| Q |
137 |
ttttataagttatatttaatagagtgaaagctcaactccaatgagctatgta |
188 |
Q |
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| T |
5002163 |
ttttataatttatattttatagagtgaaagttcaactccaatgagctatgta |
5002112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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