View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15943_low_8 (Length: 259)
Name: NF15943_low_8
Description: NF15943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15943_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 34760682 - 34760455
Alignment:
| Q |
17 |
gggttaaggtttacaggatccaccagaaaggccaaatggatactacaacaatggagaaaaggttagtgagaggttacagttgtggactgattctggtgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760682 |
gggttaaggtttacaggatccaccagaaaggccaaatggatactacaacaatggagaaaaggttagtgagaggttacagttgtggactgattctggtgaa |
34760583 |
T |
|
| Q |
117 |
gaatgtccagaaggaactgttccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaacctgttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760582 |
gaatgtccagaaggaactgttccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaacctgttc |
34760483 |
T |
|
| Q |
217 |
ggagagattcaactagtagtgatcatga |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34760482 |
ggagagattcaactagtagtgatcatga |
34760455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 43729639 - 43729430
Alignment:
| Q |
20 |
ttaaggtttacaggatccaccagaaaggccaaatggatactacaacaatggagaaaaggttagtgagaggttacagttgtggactgattctggtgaagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| | | | | || ||| | |||| |||||||||||||||| |
|
|
| T |
43729639 |
ttaaggtttacaggatccaccagaaaggccaaaagggtacaacaagaatggagaaaatgcaacaaataactttcagctttggattgattctggtgaagaa |
43729540 |
T |
|
| Q |
120 |
tgtccagaaggaactgttccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaacctgttcgga |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||| |||| |||||||| || || | |||||||||||| ||||||| | ||| |||| |
|
|
| T |
43729539 |
tgtcctaaaggaactgttccaatcagaagaacaacagaacaagattttcttagagcaagctccataagaagatttggaagaaaaccaagaggtgtacgga |
43729440 |
T |
|
| Q |
220 |
gagattcaac |
229 |
Q |
| |
|
|||| ||||| |
|
|
| T |
43729439 |
gagactcaac |
43729430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 14497624 - 14497544
Alignment:
| Q |
119 |
atgtccagaaggaactgttccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaag |
199 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||||| | || || |||| |||||||||||||| | ||||||||| |
|
|
| T |
14497624 |
atgtccagaaggaacaattccgattagaagaacaacagaacaagacatgttaagggcaagttctatcaacacatttggaag |
14497544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 30919644 - 30919603
Alignment:
| Q |
119 |
atgtccagaaggaactgttccaatcagaagaacaacagaaga |
160 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
30919644 |
atgtccagaaggatctgttccaattagaagaacaaaagaaga |
30919603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 29245697 - 29245749
Alignment:
| Q |
108 |
tctggtgaagaatgtccagaaggaactgttccaatcagaagaacaacagaaga |
160 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
29245697 |
tctggtgaatcatgtcctgaaggaacaattccaattagaagaacaacagaaga |
29245749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University