View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15944_high_7 (Length: 301)
Name: NF15944_high_7
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 27903294 - 27903038
Alignment:
| Q |
26 |
caggaactggagcagaagagttcggtttctggagacggagacgaaaatacgtttgtttccggctaccgggactcattgaaaacgtaacagtcaattttag |
125 |
Q |
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| T |
27903294 |
caggaaccggagcagaagagttcggtttccggagacggggacgagaatacgtctgtttccggctaccggcactcattgtatacggaacggtcaattttag |
27903195 |
T |
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| Q |
126 |
ggataatggaatcgtcatcgaagcgacggttacgagcggtagattttttgtcagcgatattgttgagctcgagttgagaaaaaagacggagatcaagaac |
225 |
Q |
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| T |
27903194 |
ggataacggaattgtcatcgaagcaacggttacaagctgtggagtttttgtcagcgatattgttgagctcgagttgagaaaaaagacggagatcaagaac |
27903095 |
T |
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| Q |
226 |
cggaatagtcacggtggtttccgccgtaactgttgcggtttcgttgatggtttccgc |
282 |
Q |
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| T |
27903094 |
cggaatagtcacggtggtttccgccgtaaccgttgcggtttcgttgatggtttccgc |
27903038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 33744075 - 33744357
Alignment:
| Q |
14 |
gaacaacgggagcaggaactggagcagaagagttcggtttctggagacggagacgaaaatacgtttgtttccggctaccgggactc--attgaaaacgta |
111 |
Q |
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| T |
33744075 |
gaacaacgggagcaggaaccggagcagaagagttcggtttccggagacgaagacgagaatacgtctgtttccggctaccggcgctctcattaaaaacgga |
33744174 |
T |
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| Q |
112 |
acagtcaattttagggataatggaatcgtcatcgaagcgacggttacgagcggtagattttttgtcagcgatattgttgagctcgagttgagaaaaaaga |
211 |
Q |
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| T |
33744175 |
acggtcaattttagggataacggaatcgtcatcgaaacgacggttacgagcggtggagtttttgtcagcgatattgttgagctcgagttgtgaaaaaaga |
33744274 |
T |
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| Q |
212 |
cggagatcaagaaccggaatagtcac------------ggtggtttccgccgtaactgttgcggtttcgttgatggtttccgc |
282 |
Q |
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| T |
33744275 |
cggagatcaagaaccggaagagtcacggtggtttgtttggtggtttccgccgtaaccgttgcggtttcgttgatggtttccgc |
33744357 |
T |
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