View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15944_low_1 (Length: 605)
Name: NF15944_low_1
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 15 - 589
Target Start/End: Original strand, 679240 - 679815
Alignment:
| Q |
15 |
atactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
679240 |
atactcaaatatacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagtt |
679339 |
T |
|
| Q |
114 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679340 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
679439 |
T |
|
| Q |
214 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679440 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaaca |
679539 |
T |
|
| Q |
314 |
caaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggag |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679540 |
caaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggag |
679639 |
T |
|
| Q |
414 |
gaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccac |
513 |
Q |
| |
|
| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679640 |
ggagtaacttatactttctaacggaaggattccacaacaaataagaaccagcttttagcattcagcaaaagatgccatcgcaagagcacattacgtccac |
679739 |
T |
|
| Q |
514 |
aaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatc |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679740 |
aaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatc |
679815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 258 - 587
Target Start/End: Original strand, 747402 - 747731
Alignment:
| Q |
258 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
747402 |
aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc |
747501 |
T |
|
| Q |
358 |
aatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataa |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
747502 |
aatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatat |
747601 |
T |
|
| Q |
458 |
gaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtg |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
747602 |
gaaccagcttttagcatgcagcaaaagatgccatcgcaagatcacattacgtccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtg |
747701 |
T |
|
| Q |
558 |
tatgtgtaacaacggtagaagttgataaaa |
587 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
|
|
| T |
747702 |
tatgtgtaacaacgatagaagtagataaaa |
747731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 751047 - 751290
Alignment:
| Q |
15 |
atactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
751047 |
atactcaaatatacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagttt |
751144 |
T |
|
| Q |
115 |
tagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751145 |
tagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaac |
751244 |
T |
|
| Q |
215 |
atatagtgcgctgattttagaactgcagggtttggagaattgaaat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751245 |
atatagtgcgctgattttagaactgcagggtttggagaattgaaat |
751290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 267 - 460
Target Start/End: Complemental strand, 2501944 - 2501751
Alignment:
| Q |
267 |
ggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatg |
366 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||||||||| | ||| || ||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
2501944 |
ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg |
2501845 |
T |
|
| Q |
367 |
atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
460 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| | |||| || ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
2501844 |
atcatatccaaagcttagtgatgtccattcgtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa |
2501751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 277 - 588
Target Start/End: Original strand, 2659420 - 2659734
Alignment:
| Q |
277 |
tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca |
376 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| || | |||||| ||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
2659420 |
tattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaaccttataattatcaataaaatgatcatatcca |
2659519 |
T |
|
| Q |
377 |
aagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgc |
476 |
Q |
| |
|
||||||||| ||| |||| |||||||| ||||||||| | |||| || |||||||||||||||| ||||| || |||||||||||| || ||| | | |
|
|
| T |
2659520 |
aagcttagtaatgaccatttgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaaccattattgagcttac |
2659619 |
T |
|
| Q |
477 |
agcaaaagatgccatcgcaagagc---acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggt |
573 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||| | ||| | || | |||| ||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2659620 |
cacaaaatatgccatcgcaagagctcatcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggt |
2659719 |
T |
|
| Q |
574 |
agaagttgataaaat |
588 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
2659720 |
agaagtagagaaaat |
2659734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 579
Target Start/End: Original strand, 9594898 - 9595224
Alignment:
| Q |
262 |
atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg |
361 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| || |||| |||| || | ||| ||||||| ||||||||| |
|
|
| T |
9594898 |
atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatg |
9594997 |
T |
|
| Q |
362 |
aaatgatcatatccaaagcttag----------tgatgtccatatgt-gattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaa |
450 |
Q |
| |
|
||||||||||| || ||||||| | ||||| | || || | ||||||||||| | |||| || | |||||||||||||| |||||||| |
|
|
| T |
9594998 |
aaatgatcatacccgaagcttatgaaaaaagtatcatgtc--tgcgtcgaatttccaaaggaggcaataacttaaattttctaatggaagggttccacaa |
9595095 |
T |
|
| Q |
451 |
caaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaa |
550 |
Q |
| |
|
| ||||||||||| || || | || ||||| ||||||||||||||||||| ||||||||| | ||| || | |||| ||| |||||||||||||| |
|
|
| T |
9595096 |
aacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcacaatacgtccacgtatttagatccatttgtgagagtattaggagggtaa |
9595195 |
T |
|
| Q |
551 |
agttgtgtatgtgtaacaacggtagaagt |
579 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |
|
|
| T |
9595196 |
agttgtgtctgtgtaacaatggtagaagt |
9595224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 7324687 - 7324803
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
364 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
7324687 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaa |
7324786 |
T |
|
| Q |
365 |
tgatcatatccaaagct |
381 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
7324787 |
tgatcgtacccaaagct |
7324803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 2491871 - 2491753
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
364 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||| ||||| ||| || ||||| ||||||||| ||| ||||||| | |||||||||| |
|
|
| T |
2491871 |
tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaaa |
2491772 |
T |
|
| Q |
365 |
tgatcatatccaaagctta |
383 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2491771 |
tgatcatacccaaagctta |
2491753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 460
Target Start/End: Original strand, 2644633 - 2644819
Alignment:
| Q |
277 |
tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca |
376 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | ||| || ||||| |||||||| || ||||||| ||||||| ||| |||||||||||| |
|
|
| T |
2644633 |
tattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatcaacgaagtgatcatatcca |
2644732 |
T |
|
| Q |
377 |
aagcttagtgatgtccata----tgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
460 |
Q |
| |
|
|||||||||| | | ||| ||||| | ||||||||||| | |||| || ||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
2644733 |
aagcttagtgttct-gataaaattgtgactttccaaaggaggcaataacttaaactttctaacggaagggttccacaagaaataagaa |
2644819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 479 - 589
Target Start/End: Original strand, 9566320 - 9566430
Alignment:
| Q |
479 |
caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag |
578 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
9566320 |
caaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaag |
9566419 |
T |
|
| Q |
579 |
ttgataaaatc |
589 |
Q |
| |
|
| ||||||||| |
|
|
| T |
9566420 |
tagataaaatc |
9566430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 265 - 383
Target Start/End: Original strand, 9566094 - 9566212
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
364 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| || |||| || ||||||| || | ||||| |||||||||||| |
|
|
| T |
9566094 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa |
9566193 |
T |
|
| Q |
365 |
tgatcatatccaaagctta |
383 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
9566194 |
tgatcatacccaaaactta |
9566212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 7443269 - 7443378
Alignment:
| Q |
274 |
ctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatat |
373 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||| ||||||| | || ||||||| | ||||||| |||| |||||||||||||||||||| |
|
|
| T |
7443269 |
ctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaatgatcatac |
7443368 |
T |
|
| Q |
374 |
ccaaagctta |
383 |
Q |
| |
|
||||| |||| |
|
|
| T |
7443369 |
ccaaaactta |
7443378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 508
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
| Q |
428 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacg |
508 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||| | || |||||||||||||||||||||| ||||| |
|
|
| T |
2635294 |
tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg |
2635214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 2474895 - 2474776
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatca-tcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaa |
363 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||| || |||| ||||||| |||| |||| | ||||||||||| |
|
|
| T |
2474895 |
tgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaatacaatggccttgtaattatcaatgaa |
2474796 |
T |
|
| Q |
364 |
atgatcatatccaaagctta |
383 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2474795 |
atgatcatatccaaagctta |
2474776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 9562235 - 9562342
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
364 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||| || |||| | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
9562235 |
tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa |
9562334 |
T |
|
| Q |
365 |
tgatcata |
372 |
Q |
| |
|
|||||||| |
|
|
| T |
9562335 |
tgatcata |
9562342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 383
Target Start/End: Original strand, 754888 - 754998
Alignment:
| Q |
273 |
cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcata |
372 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||| || |||| || ||||||| || ||||| | |||| ||||||||||||||| |
|
|
| T |
754888 |
cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgtaattatgaatgaaatgatcata |
754987 |
T |
|
| Q |
373 |
tccaaagctta |
383 |
Q |
| |
|
|||||||||| |
|
|
| T |
754988 |
cccaaagctta |
754998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 2632659 - 2632504
Alignment:
| Q |
98 |
aaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaa |
197 |
Q |
| |
|
||||||||||||||||| | |||||||||| | ||||| || | ||||||||||||| ||||| |||||||||| ||||| | |||| |||||||| |
|
|
| T |
2632659 |
aaactcactataagtttcaaaaagctaaatat---gaattattcacacacatgtgaagtgtatga--ctatgataatacaaagaacgagtggtgaaagaa |
2632565 |
T |
|
| Q |
198 |
t----ctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa |
258 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2632564 |
aagacctgatcttcacaaaacaa----tgtgctgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 503
Target Start/End: Complemental strand, 2474749 - 2474651
Alignment:
| Q |
404 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
503 |
Q |
| |
|
||||||||||| | |||| || | |||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
2474749 |
tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca |
2474651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 383
Target Start/End: Original strand, 7334560 - 7334658
Alignment:
| Q |
285 |
tccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagctta |
383 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||| | ||||| | ||||||| |||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7334560 |
tccaataatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatgaaatgatcatatccgaagctta |
7334658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 2631138 - 2631013
Alignment:
| Q |
258 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
357 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||||||||| ||| ||||||| || | |||| || |||| ||||||||| ||| ||||||| ||||| |
|
|
| T |
2631138 |
aataatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatc |
2631039 |
T |
|
| Q |
358 |
aatgaaatgatcatatccaaagctta |
383 |
Q |
| |
|
||||||| |||||| |||||||||| |
|
|
| T |
2631038 |
aatgaaacaatcatacccaaagctta |
2631013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 579
Target Start/End: Original strand, 9562507 - 9562558
Alignment:
| Q |
528 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagt |
579 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
9562507 |
ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagt |
9562558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 2476426 - 2476308
Alignment:
| Q |
265 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
364 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||||| ||| || |||| |||||||| || ||||| | |||||||| || |
|
|
| T |
2476426 |
tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaa |
2476327 |
T |
|
| Q |
365 |
tgatcatatccaaagctta |
383 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2476326 |
tgatcatacccaaagctta |
2476308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 579
Target Start/End: Complemental strand, 2476159 - 2476118
Alignment:
| Q |
538 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagt |
579 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
2476159 |
attaggagggtaaagttgtgtctgtgtaacaacggttgaagt |
2476118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 2630971 - 2630909
Alignment:
| Q |
398 |
tgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
460 |
Q |
| |
|
||||| ||||| ||||| | |||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2630971 |
tgattttccaatggaggcaataacttaaactttctaatggaagggttccacaagaaataagaa |
2630909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 7324862 - 7324932
Alignment:
| Q |
431 |
ctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagca |
501 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| ||||||| |||| |||||||| |||||||| |
|
|
| T |
7324862 |
ctaatggaagggttccacaaataataagaaccaactttgagcatgcccaaaaaaatgccatcacaagagca |
7324932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University