View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15944_low_2 (Length: 564)

Name: NF15944_low_2
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15944_low_2
NF15944_low_2
[»] chr7 (31 HSPs)
chr7 (1-549)||(24390830-24391378)
chr7 (40-297)||(24384650-24384907)
chr7 (436-549)||(24385052-24385165)
chr7 (245-297)||(19637581-19637633)
chr7 (182-297)||(24383733-24383848)
chr7 (250-297)||(46769039-46769086)
chr7 (247-297)||(22021051-22021101)
chr7 (252-304)||(19779275-19779327)
chr7 (249-297)||(22036771-22036819)
chr7 (250-297)||(16846801-16846848)
chr7 (45-80)||(20455944-20455979)
chr7 (242-297)||(22534303-22534358)
chr7 (250-297)||(26217632-26217679)
chr7 (250-297)||(26229882-26229929)
chr7 (250-297)||(26237279-26237326)
chr7 (252-298)||(16839717-16839763)
chr7 (252-294)||(20414576-20414618)
chr7 (252-294)||(20456193-20456235)
chr7 (42-128)||(24383593-24383679)
chr7 (39-80)||(13888641-13888682)
chr7 (423-480)||(14076542-14076599)
chr7 (423-480)||(14386570-14386627)
chr7 (245-294)||(19351400-19351449)
chr7 (247-288)||(22028323-22028364)
chr7 (266-299)||(22039899-22039932)
chr7 (245-297)||(18953269-18953321)
chr7 (245-297)||(18983316-18983368)
chr7 (245-297)||(18997962-18998014)
chr7 (252-304)||(19888056-19888108)
chr7 (181-221)||(20456104-20456144)
chr7 (245-297)||(22473477-22473529)
[»] chr6 (7 HSPs)
chr6 (345-511)||(24950264-24950427)
chr6 (190-276)||(24950446-24950532)
chr6 (41-128)||(24956063-24956153)
chr6 (440-487)||(6921509-6921556)
chr6 (238-287)||(24955888-24955937)
chr6 (249-297)||(33568660-33568708)
chr6 (440-487)||(6943113-6943160)
[»] chr1 (2 HSPs)
chr1 (242-294)||(39379425-39379477)
chr1 (227-294)||(17561110-17561178)
[»] scaffold0128 (3 HSPs)
scaffold0128 (246-297)||(8269-8320)
scaffold0128 (245-297)||(3830-3882)
scaffold0128 (245-297)||(25317-25369)
[»] chr4 (4 HSPs)
chr4 (245-294)||(3565401-3565450)
chr4 (246-294)||(1686649-1686697)
chr4 (248-294)||(3557386-3557432)
chr4 (245-297)||(3561319-3561371)
[»] scaffold0707 (1 HSPs)
scaffold0707 (249-297)||(5054-5102)
[»] chr5 (2 HSPs)
chr5 (245-297)||(42297807-42297859)
chr5 (39-76)||(23086143-23086180)
[»] scaffold0097 (2 HSPs)
scaffold0097 (436-487)||(16531-16582)
scaffold0097 (248-297)||(16712-16761)
[»] chr2 (4 HSPs)
chr2 (436-487)||(20712692-20712743)
chr2 (250-297)||(20975226-20975273)
chr2 (248-297)||(20712873-20712922)
chr2 (245-297)||(18921088-18921140)
[»] chr3 (1 HSPs)
chr3 (250-294)||(36339792-36339836)


Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 24390830 - 24391378
Alignment:
Q  1 ggacaaacattactgcaggttgacggaagataggctctatgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24390830 ggacaaacattactgcaggttgacggaagataggctctatgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattgg 24390929  T
Q  101 ttttatttctataacctggccacaaggaaagtatcggaaaaactagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaa 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24390930 ttttatttctataacccggccacaaggaaagtatcggaaaaattagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaa 24391029  T
Q  201 cggacacatataaggtagtggagttttgtcaaatgagtagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391030 cggacacatataaggtagtggagttttgtcaaatgagtagagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaa 24391129  T
Q  301 tgtttttattccctttaaagttggctacaatagttgtcgtggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391130 tgtttttattccctttaaagttggctacaatagttgtcgtggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatat 24391229  T
Q  401 gatgattcgaagaataggatgtttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24391230 gatgattcgaagaataggatgtttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccgtg 24391329  T
Q  501 aagtgttgttgaatgagccaaccatttgtgtgctcatggattgcctttg 549  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24391330 aagtgttgttgaatgagtcaaccatttgtgtgctcatggattgcctttg 24391378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 40 - 297
Target Start/End: Original strand, 24384650 - 24384907
Alignment:
Q  40 tgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacctggccacaaggaaagtatcggaa 139  Q
    ||||||||||| |||||| ||||||||||| |||||||||| | || |||||||| ||||| ||||||||||||||| ||||||||| |||||||| ||     
T  24384650 tgttgttggttgctgcaacggtttggtttgtttgcttggttattataaattagaatattggctttatttctataacccggccacaagaaaagtatctgac 24384749  T
Q  140 aaactagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaacggacacatataaggtagtggagttttgtcaaatgagta 239  Q
    ||| | |||||||||||| ||||  || |||||||||||||||| || |||||||||||||||||||| |||||||||||| |  |   | |||||||||    
T  24384750 aaattggggtcttttacatggacgtatggatcaaatattgcgttcggatttgataattcaacggacacttataaggtagtgcatatcaataaaatgagta 24384849  T
Q  240 gagatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||||  |||||||||||||| ||| |||||||||||| |||||||||||||||    
T  24384850 gagatgtgaaggtttttagtttgggagatgatatttggagaagtattcaaagttttcc 24384907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 24385052 - 24385165
Alignment:
Q  436 gatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctc 535  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||  || |||  |||||||||||||||||||  |||   ||||||||||     
T  24385052 gatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaagtgttgttgaatgaaacaagtctttgtgtgctt 24385151  T
Q  536 atggattgcctttg 549  Q
    ||||||||||||||    
T  24385152 atggattgcctttg 24385165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 19637633 - 19637581
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  19637633 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 19637581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 24383733 - 24383848
Alignment:
Q  182 tttggttttgataattcaacggacacatataaggtagtggagttttgtcaaatgagtagagatgtgagagtttttagtttgggtgataatatttggagaa 281  Q
    ||||||| ||||| || ||| ||||| |||||||| ||| | || |||  || ||| |||||||  ||  ||||||||||||||||||||||||||| ||    
T  24383733 tttggttatgatactttaactgacacctataaggtcgtgaacttctgtgcaacgagcagagatgcaaggatttttagtttgggtgataatatttggaaaa 24383832  T
Q  282 atattcaaagttttcc 297  Q
     ||||| |||||||||    
T  24383833 gtattccaagttttcc 24383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 46769039 - 46769086
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  46769039 agttttgagtgtgggtgataatatttggagaactattcaaagttttcc 46769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 22021051 - 22021101
Alignment:
Q  247 gagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22021101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 19779275 - 19779327
Alignment:
Q  252 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 304  Q
    |||| |||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcccattgtt 19779327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 22036771 - 22036819
Alignment:
Q  249 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22036819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 16846848 - 16846801
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  16846848 agtttttagtctgggcgataatgcttggagaaatattcaaagttttcc 16846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 20455944 - 20455979
Alignment:
Q  45 ttggttcctgcaatggtttggtttgcttgcttggtt 80  Q
    |||||||||||||||| |||||||||||||||||||    
T  20455944 ttggttcctgcaatggattggtttgcttgcttggtt 20455979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 22534303 - 22534358
Alignment:
Q  242 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  22534303 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 22534358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 26217632 - 26217679
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26217632 agtttttagtttgggtggtaactcttggagaaatattcaaagttttcc 26217679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 26229882 - 26229929
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26229882 agtttttagtttgggtggtaactgttggagaaatattcaaagttttcc 26229929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 26237279 - 26237326
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26237279 agtttttagtttgggtgttaactgttggagaaatattcaaagttttcc 26237326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 16839763 - 16839717
Alignment:
Q  252 tttttagtttgggtgataatatttggagaaatattcaaagttttccc 298  Q
    |||||||| |||| ||||| | |||||||||||||||||||||||||    
T  16839763 tttttagtctgggcgataacacttggagaaatattcaaagttttccc 16839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 20414576 - 20414618
Alignment:
Q  252 tttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||||||||||||||| ||||||||| |||| |||||||    
T  20414576 tttttagtttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 20456193 - 20456235
Alignment:
Q  252 tttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  20456193 tttttagtttgggtgataatgtttggagaagtattcaatgttt 20456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 24383593 - 24383679
Alignment:
Q  42 ttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacctggccacaagga 128  Q
    |||||||||||||||||||||| || |||||| |||||  |  | | |||||||  ||||| |||||||||| || |||||||||||    
T  24383593 ttgttggttcctgcaatggtttagtatgcttggttggtaattctgatttagaaagatggttgtatttctatatcccggccacaagga 24383679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 13888682 - 13888641
Alignment:
Q  39 atgttgttggttcctgcaatggtttggtttgcttgcttggtt 80  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  13888682 atgttgttggttcctgcaatggattggtctgcttgctcggtt 13888641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 14076542 - 14076599
Alignment:
Q  423 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 480  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14076599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 14386570 - 14386627
Alignment:
Q  423 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 480  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14386627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 19351449 - 19351400
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||| ||||||||||||| |||||||| |||||||| |||||| ||||||    
T  19351449 gtgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 22028323 - 22028364
Alignment:
Q  247 gagagtttttagtttgggtgataatatttggagaaatattca 288  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  22028323 gagagtttttagtttgggcgataatgtttggaggaatattca 22028364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 22039899 - 22039932
Alignment:
Q  266 gataatatttggagaaatattcaaagttttccca 299  Q
    |||||| |||||||||||||||||||||||||||    
T  22039899 gataatgtttggagaaatattcaaagttttccca 22039932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 18953321 - 18953269
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18953321 gtgagagttttcaattttggcgataatgtttggagacatattcaaagttttcc 18953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 18983368 - 18983316
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18983368 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18983316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 18998014 - 18997962
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||||||| | ||| || |||||| |||||||| ||||||||||||||||    
T  18998014 gtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcc 18997962  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 19888108 - 19888056
Alignment:
Q  252 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 304  Q
    ||||||||||| ||||||||||||||||| ||||||  | |||||||| ||||    
T  19888108 tttttagtttgagtgataatatttggagagatattccgaattttcccattgtt 19888056  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 20456104 - 20456144
Alignment:
Q  181 gtttggttttgataattcaacggacacatataaggtagtgg 221  Q
    |||| |||||||||||||||| |||||||||||||| ||||    
T  20456104 gttttgttttgataattcaaccgacacatataaggttgtgg 20456144  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 22473529 - 22473477
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||| || ||||||||||||||| ||||||||||  ||||||| |||||    
T  22473529 gtgagagtcttcagtttgggtgataatgtttggagaaaacttcaaagatttcc 22473477  T

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Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 345 - 511
Target Start/End: Complemental strand, 24950427 - 24950264
Alignment:
Q  345 gtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatcatctc 444  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||   | ||| |||   |   ||||| ||| ||||||||||||    
T  24950427 gtgtgtatttgagcggaactcttaattggttggtcattcgaaatgatattacatatgat---tggaataatcatactgttgagaattttgcgatcatctc 24950331  T
Q  445 acttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttg 511  Q
    |||||||| | ||| ||||||||||| |||||||||||||||| ||| |||  |||||| |||||||    
T  24950330 acttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaagggttgttg 24950264  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 24950532 - 24950446
Alignment:
Q  190 tgataattcaacggacacatataaggtagtggagttttgtcaaatgagtagagatgtgagagtttttagtttgggtgataatatttg 276  Q
    ||||| || ||| ||||| |||||||||||| |  ||||| ||| || |||||| ||||||||||||||||||||||||||||||||    
T  24950532 tgatactttaactgacacctataaggtagtgaacgtttgtgaaacgaatagagaggtgagagtttttagtttgggtgataatatttg 24950446  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 24956153 - 24956063
Alignment:
Q  41 gttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattag--aaaat-tggttttatttctataacctggccacaagga 128  Q
    ||||||||||| |||||||||||  | || ||||||||||||||||| ||||  ||||| |||||||||||||||||||| || |||||||    
T  24956153 gttgttggttcttgcaatggtttactatgtttgcttggttttaatcatttagacaaaatatggttttatttctataacctagctacaagga 24956063  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 6921556 - 6921509
Alignment:
Q  440 atctcacttgatttggggatagagacatacacacaattgttgccccct 487  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  6921556 atctcacttgatttggggacagagacatatacacaattgttgctccct 6921509  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 24955937 - 24955888
Alignment:
Q  238 tagagatgtgagagtttttagtttgggtgataatatttggagaaatattc 287  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  24955937 tagagaggtgagagtttttagtttgggggataatatctggagagatattc 24955888  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 33568660 - 33568708
Alignment:
Q  249 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  33568660 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 33568708  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 6943160 - 6943113
Alignment:
Q  440 atctcacttgatttggggatagagacatacacacaattgttgccccct 487  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  6943160 atctcacttgatttggggacagagacatatacaaaattgttgctccct 6943113  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  242 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 17561178 - 17561110
Alignment:
Q  227 tgtcaaatgagtagagatgtgagagttttta-gtttgggtgataatatttggagaaatattcaaagttt 294  Q
    ||||||| ||||||  |||||||| |||||| |||||||||||||  |||||||| |||||||||||||    
T  17561178 tgtcaaaggagtagcaatgtgagaatttttaagtttgggtgataacgtttggagagatattcaaagttt 17561110  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 8269 - 8320
Alignment:
Q  246 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  8269 tgagagtctttagtttgggtgataatgtttggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 3830 - 3882
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||||||||||||||   ||||| ||||||||| ||||| |||||||||    
T  3830 gtgagagtttttagtttggcgaataatgtttggagaactattccaagttttcc 3882  T

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Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 25317 - 25369
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||| ||| |||||||||||||||||| |||||||| |||||| ||| |||||    
T  25317 gtgaaagtctttagtttgggtgataatgtttggagacatattcgaagatttcc 25369  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 3565401 - 3565450
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3565401 gtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  246 tgagagtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 3557386 - 3557432
Alignment:
Q  248 agagtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3557386 agagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 3561371 - 3561319
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||| |||  |||| ||||||||| |||||||||||||| ||||||||||    
T  3561371 gtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcc 3561319  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 5054 - 5102
Alignment:
Q  249 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  5054 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 5102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||| ||||||||||  |||||| ||||||||| |||||||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 23086143 - 23086180
Alignment:
Q  39 atgttgttggttcctgcaatggtttggtttgcttgctt 76  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  23086143 atgttgttggttcctgcaatggattgctttgcttgctt 23086180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 16582 - 16531
Alignment:
Q  436 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 487  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  16582 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 16531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 16761 - 16712
Alignment:
Q  248 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  16761 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 16712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 20712743 - 20712692
Alignment:
Q  436 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 487  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  20712743 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 20712692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 20975226 - 20975273
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||| | |||||| || |||||||||||||||||||||||||||||    
T  20975226 agttttcactttgggcgaaaatatttggagaaatattcaaagttttcc 20975273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 20712922 - 20712873
Alignment:
Q  248 agagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  20712922 agagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 20712873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 18921140 - 18921088
Alignment:
Q  245 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 297  Q
    |||| |||||| |||||| |||||||| |||||||  ||||||||||||||||    
T  18921140 gtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttttcc 18921088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 36339792 - 36339836
Alignment:
Q  250 agtttttagtttgggtgataatatttggagaaatattcaaagttt 294  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagttt 36339836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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