View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15944_low_20 (Length: 209)
Name: NF15944_low_20
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18780981 - 18780790
Alignment:
| Q |
1 |
tgctcaagacacattgtattatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18780981 |
tgctcaagacacattgtattatggcgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
18780882 |
T |
|
| Q |
101 |
cctaagaaagcatcaaagtttacggttgctggactccttactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18780881 |
cctaaggaagcatcaaagtttacggttgctggactcattactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
18780790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1606165 - 1605974
Alignment:
| Q |
1 |
tgctcaagacacattgtattatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1606165 |
tgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaac |
1606066 |
T |
|
| Q |
101 |
cctaagaaagcatcaaagtttacggttgctggactccttactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606065 |
cctaatgaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgccatttacatctggtctttg |
1605974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1629463 - 1629272
Alignment:
| Q |
1 |
tgctcaagacacattgtattatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||| |
|
|
| T |
1629463 |
tgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaac |
1629364 |
T |
|
| Q |
101 |
cctaagaaagcatcaaagtttacggttgctggactccttactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
192 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629363 |
ccaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgccatttacatctggtctttg |
1629272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 1623287 - 1623096
Alignment:
| Q |
1 |
tgctcaagacacattgtattatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1623287 |
tgctcaagatacattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaac |
1623188 |
T |
|
| Q |
101 |
cctaagaaagcatcaaagtttacggttgctggactccttactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
192 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1623187 |
cgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactaccgtgccatttacatctggtctttg |
1623096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10821235 - 10821426
Alignment:
| Q |
1 |
tgctcaagacacattgtattatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||| |||||||||| |
|
|
| T |
10821235 |
tgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaac |
10821334 |
T |
|
| Q |
101 |
cctaagaaagcatcaaagtttacggttgctggactccttactggaccaacatggctggctacaactactgtgccatttacatctggtctttg |
192 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10821335 |
ccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaaactactgtgccatttacatctggtctttg |
10821426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 12802529 - 12802459
Alignment:
| Q |
19 |
ttatggtgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatggcctggttatcatg |
89 |
Q |
| |
|
|||||| ||||| |||| | ||| ||||| ||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
12802529 |
ttatggagagtacaagaactttgggcctggatcatcaacaagaaatagagtaagatggcctggttatcatg |
12802459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 19476880 - 19476921
Alignment:
| Q |
11 |
acattgtattatggtgagtatgagaattatggacctggttca |
52 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||||||||||| |
|
|
| T |
19476880 |
acattgttttatggtgaatatgaaaattatggacctggttca |
19476921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University