View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15944_low_3 (Length: 500)
Name: NF15944_low_3
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_3 |
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| [»] scaffold0340 (2 HSPs) |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 37 - 458
Target Start/End: Original strand, 6436826 - 6437247
Alignment:
| Q |
37 |
aaaagaaagtatgtcatacactagaaccatttgtttacatgtttgtttcaatttcttttttgtgatcttcggattaaggttttatgatggggataattga |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6436826 |
aaaagaaagtatgtcatacactagaaccatttgtttacatgtttgtttcaatttcttttttgtgatcttcggattaaggttttatgatggggataattga |
6436925 |
T |
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| Q |
137 |
ttttgtctgttatcctattgataattgttactc-nnnnnnnnnnnnnnctgggttaaagtgaggaaaattaagaaagatgagatgaatgatgctcttgga |
235 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
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| T |
6436926 |
ttttgtctgttatcctattgataattgttactctttttttttatttttctgggttaaagtgaggaaaattgagaaagatgagatgaatgatgttgttgga |
6437025 |
T |
|
| Q |
236 |
agagatggatgatgttccttcattttggtccatgttgttatatcacagcttacatgtctccaaaaatatgtcaaactcagcnnnnnnnnggagttacggc |
335 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
6437026 |
agagatggatgatgttctttcattttggttcatgttgttatatcacagcttacatgtctccaaaaatatgtc-aactcagcttttttgtggagttacggc |
6437124 |
T |
|
| Q |
336 |
catatctaatgttagagatcagggaccattataacagcgaggtgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattt |
435 |
Q |
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|| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6437125 |
caaatctaatgttagagatcacggaccattataacagtgagttgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattt |
6437224 |
T |
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| Q |
436 |
tatttttactttgtttctttctt |
458 |
Q |
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|||||||| |||||||||||||| |
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| T |
6437225 |
tatttttaatttgtttctttctt |
6437247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 35714192 - 35714344
Alignment:
| Q |
15 |
atgaatggatgcatttcaaccgaaaagaaagtatgtcatacactagaaccatttgtttacatgtttgtttcaatttcttttttgtgatcttcggattaag |
114 |
Q |
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|||||||||||||||||||| | |||| ||||||||||||||| |||||| ||| ||||||||||||||||| ||| |||||| | || || || ||||| |
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| T |
35714192 |
atgaatggatgcatttcaactggaaaggaagtatgtcatacaccagaacc-tttatttacatgtttgtttcagtttttttttt-taatttttggcttaag |
35714289 |
T |
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| Q |
115 |
gttttatgatggggataattgattttgtctgttatcctattgataattgttactc |
169 |
Q |
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| T |
35714290 |
gttttatgatggggataattgattttatatgttatcatattgatgattgttactc |
35714344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 19126 - 19010
Alignment:
| Q |
184 |
ctgggttaaagtgaggaaaattaagaaagatgagatgaatgatgctcttggaagagatggatgatgttccttcattttggtccatgttgttatatcacag |
283 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |
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| T |
19126 |
ctgggttaaagtgaggaaaattgagaaagatgagatgaatgatgttgttggaagagatgaatgatgttctttcattttggttcatgtggttatatcac-t |
19028 |
T |
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| Q |
284 |
cttacatgtctccaaaaa |
301 |
Q |
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| T |
19027 |
cttacatgtcttcaaaaa |
19010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 458
Target Start/End: Complemental strand, 18898 - 18801
Alignment:
| Q |
360 |
accattataacagcgaggtgcatattcataaactaaaatggttgtttaccgtcattttaatgaaatataattattttatttttactttgtttctttctt |
458 |
Q |
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|||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
18898 |
accattatgacagcgaggtgcacattcgtaaactaaaatgattgtttaccgtcattttaataaaatataattatttta-ttttactttgtttctttctt |
18801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 4975 - 4942
Alignment:
| Q |
107 |
ggattaaggttttatgatggggataattgatttt |
140 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4975 |
ggattaaggttttatgatggggataattgatttt |
4942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 5470 - 5538
Alignment:
| Q |
231 |
ttggaagagatggatgatgttccttcattttggtccatgttgttatatcacagcttacatgtctccaaa |
299 |
Q |
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| T |
5470 |
ttggaagagatgaaagatgctctttcattttggtccctgttgccacctcacaacttacatgtctccaaa |
5538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 13034063 - 13033963
Alignment:
| Q |
209 |
aaagatgagatgaatgatgctcttggaagagatggatgatgttccttcattttggtccatgttgttatatcacagcttacatgtctccaaaaatatgtca |
308 |
Q |
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|||||||||||||||| || | |||||||||||| | | |||| ||||||||||| ||||| ||| ||||| |||||| || |||| ||| |||||| |
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| T |
13034063 |
aaagatgagatgaatgttgttgttggaagagatgaagggtgttatttcattttggtttatgtttctatctcacaacttacaagtgtccagaaaaatgtca |
13033964 |
T |
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| Q |
309 |
a |
309 |
Q |
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| T |
13033963 |
a |
13033963 |
T |
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