View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15944_low_4 (Length: 472)
Name: NF15944_low_4
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 11536185 - 11535761
Alignment:
| Q |
18 |
attgaaatttaatcccaatacaactctatttatatttattctgtttacttttattcaa-ccaccaaaatagtttataaatgctttgttaaaatatgttga |
116 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11536185 |
attgaaatttaatcccaacataactctatttatatttattcagtttacttttattcaaaccaccaaaatagtttataaatgctttgttaaaatatgttga |
11536086 |
T |
|
| Q |
117 |
tatcaactcaagttaactaagcgcggtctttgtagatacgannnnnnnnnnnnnnn--ataaaacagacatacttaccattgtgctaatcataacacatg |
214 |
Q |
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||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11536085 |
tatcaactcaagttaactaagcgcggtctttgtggataggatttttttttttttttttataaaacagacatacttaccattgtgctaatcataacacatg |
11535986 |
T |
|
| Q |
215 |
atcaatctaacggttgaattgaaaaggaatctatcaggaacccaagcgttgagaatgattcaacagttgagacacctcctctaaaaccagcactaaaaaa |
314 |
Q |
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||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11535985 |
atcaatctaccggttgaa-----aaggaatctattaggtacccaagcgttgagaatgattcaacagttgagacacctcctctaaaaccagcactaaaaaa |
11535891 |
T |
|
| Q |
315 |
ccacttggggtctaagtaatcaagttcattaatagtctttacacgtggtagtctgtaaccaaaggctatgtcccctaaatctcatctttgagatgccaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
11535890 |
ccacttggggtctaagtaatcaagttcattaataatctttacacgtgtcagtcagtaaccaaaggctatgtcccctaaatctcatttttgagatgctaat |
11535791 |
T |
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| Q |
415 |
atttaatgttgaaattgacatatgactaag |
444 |
Q |
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| T |
11535790 |
atttaatgttgaaattgacatatgactaag |
11535761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 318386 - 318287
Alignment:
| Q |
42 |
tctatttatatttattctgtttacttttattcaa-ccaccaaaatagtttataaatgctttgtt---aaaatatgttgatatcaactcaagttaactaag |
137 |
Q |
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||||| ||||||||||| |||| | || |||||| ||||||||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| |
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| T |
318386 |
tctatctatatttattcagtttgcattgattcaaaccaccaaaaccttttataaatgctttgttcataaaatgtgtcgatataaactcaagttaactaag |
318287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 21556883 - 21556740
Alignment:
| Q |
18 |
attgaaatttaatcccaatacaactctatttatatttattctgtttacttttattca-accaccaaaatagtttataaatgctttgt---taaaatatgt |
113 |
Q |
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||||||||| |||||||| |||||||||| ||||| | ||| ||||||||| ||||| ||||| ||| | | | ||| |||||| |||||||||| |
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| T |
21556883 |
attgaaattcaatcccaacacaactctatatatatctgttcagtttactttgattcagaccacaaaataaaatgacaaacactttgtccataaaatatgt |
21556784 |
T |
|
| Q |
114 |
tgatatcaactcaagttaactaagcgcggtctttgtagatacga |
157 |
Q |
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|||||| ||||||| |||||||||||| ||| ||| ||||||| |
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| T |
21556783 |
tgatataaactcaatttaactaagcgctatctctgtggatacga |
21556740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 13307063 - 13307102
Alignment:
| Q |
106 |
aaatatgttgatatcaactcaagttaactaagcgcggtct |
145 |
Q |
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| T |
13307063 |
aaatatgttgatataaactcaagttaactaagtgcggtct |
13307102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 27733714 - 27733633
Alignment:
| Q |
327 |
taagtaatcaagttcattaatagtctttacacgtggtagtctgtaaccaaaggctatgtcccctaaatctcatctttgagat |
408 |
Q |
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||||||||||||| |||| |||||||||||||||| | || | |||||| || ||||||| | |||||||||||| |||| |
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| T |
27733714 |
taagtaatcaagtgcattgctagtctttacacgtggcactcagaaaccaatggtaatgtcccttcaatctcatctttcagat |
27733633 |
T |
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