View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15944_low_5 (Length: 426)
Name: NF15944_low_5
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 50245315 - 50245039
Alignment:
| Q |
1 |
ctctctttcaagtttcaaaaacacaatccgtaaacaattaaatcaataaatataattatatctcacnnnnnnnnaagaataatcatgtc--acttgatct |
98 |
Q |
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| T |
50245315 |
ctctctttcaagtttcaaaaacacaatccgtaaacaattaaatcaataaatataattatatctcacttttttttaagaataatcatgtctcacttgatct |
50245216 |
T |
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| Q |
99 |
tttaatatgactgattgatataatggtagaaacaaattcatatatggtacagcttaactcatttatgtaagatagaactagcctaaattttatcattttg |
198 |
Q |
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| T |
50245215 |
tttaatatgactgattgatataatggtagaaacaaattcatatatggtacagcttaactcatttatgtaagatagaactagcctaaattttatcattttg |
50245116 |
T |
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| Q |
199 |
tgtctgtctatcagaaattacatcccaaaacagtgctacaccttgaccaagaggacgaagagggaaatatagaaaag |
275 |
Q |
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| T |
50245115 |
tgtctgtctatcagaaatttcatcccaaaacagtgctacaccttgaccaagaggacgaagagggaaatatagaaaag |
50245039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 50244959 - 50244905
Alignment:
| Q |
354 |
ccttctttgaaaattatcatggcctgcctcaaaaaaccattgctgaattcacctg |
408 |
Q |
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| T |
50244959 |
ccttctttgaaaattatcatggcctgcctcaaaaaaccattgctgaattcacctg |
50244905 |
T |
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