View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15944_low_6 (Length: 370)

Name: NF15944_low_6
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15944_low_6
NF15944_low_6
[»] chr3 (8 HSPs)
chr3 (18-355)||(47193463-47193800)
chr3 (220-354)||(9792564-9792698)
chr3 (43-238)||(26698555-26698750)
chr3 (43-238)||(26733718-26733913)
chr3 (43-235)||(26750879-26751071)
chr3 (43-238)||(26736943-26737138)
chr3 (180-247)||(47212255-47212322)
chr3 (43-238)||(26713707-26713902)
[»] chr7 (7 HSPs)
chr7 (214-355)||(6609317-6609458)
chr7 (214-355)||(6624663-6624804)
chr7 (177-291)||(21130440-21130554)
chr7 (180-256)||(18658605-18658681)
chr7 (180-247)||(29213017-29213084)
chr7 (177-231)||(21098712-21098766)
chr7 (177-291)||(21123312-21123426)
[»] chr4 (1 HSPs)
chr4 (177-238)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (194-231)||(11791111-11791148)
[»] chr2 (1 HSPs)
chr2 (47-83)||(23466619-23466655)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 47193800 - 47193463
Alignment:
Q  18 acttttgacgtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctat 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193800 acttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctat 47193701  T
Q  118 tcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193700 tcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaa 47193601  T
Q  218 acactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193600 acactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaa 47193501  T
Q  318 gaaccatgttctatatactcatagaccaaaagcctatg 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47193500 gaaccatgttctatatactcatagaccaaaagcctatg 47193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 354
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  220 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 319  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  320 accatgttctatatactcatagaccaaaagcctat 354  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 26698555 - 26698750
Alignment:
Q  43 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 142  Q
    ||||||||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||  ||||||||||| || || |||||||||||    
T  26698555 aaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcattcctattcaatagcttagacaaaccaaaatc 26698654  T
Q  143 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 238  Q
     || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| |||||||||||||| |||||||||||    
T  26698655 tgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaataagc 26698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 26733718 - 26733913
Alignment:
Q  43 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 142  Q
    ||||||||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||  ||||||||||| || || |||||||||||    
T  26733718 aaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcattcctattcaatagcttagacaaaccaaaatc 26733817  T
Q  143 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 238  Q
     || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| |||||||||||||| |||||||||||    
T  26733818 tgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaataagc 26733913  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 26750879 - 26751071
Alignment:
Q  43 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 142  Q
    ||||||||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||| ||||||||||| || || | |||||||||    
T  26750879 aaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcatccctattcaatagcttggacagaccaaaatc 26750978  T
Q  143 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaata 235  Q
    ||| ||||| |||||  |||  | |||||  |  || ||||| ||||| | ||| ||||| |||| ||| |||||||| ||||| ||||||||    
T  26750979 agctaccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaata 26751071  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 26736943 - 26737138
Alignment:
Q  43 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 142  Q
    ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    ||| ||||| | ||||  || |||||||| || || |||||||||||    
T  26736943 aaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaattatcatgctcattcctgttcaatagcttagacaaaccaaaatc 26737042  T
Q  143 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 238  Q
     |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  26737043 tgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagc 26737138  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  180 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 247  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 26713707 - 26713902
Alignment:
Q  43 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 142  Q
    ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    ||| ||||| | ||||  || |||||||| || || |||||||||||    
T  26713707 aaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaattatcatgctcattccttttcaatagcttagacaaaccaaaatc 26713806  T
Q  143 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 238  Q
     |||||||| ||| || |||    |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  26713807 tgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  214 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 313  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  314 taaagaaccatgttctatatactcatagaccaaaagcctatg 355  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 214 - 355
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  214 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 313  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  314 taaagaaccatgttctatatactcatagaccaaaagcctatg 355  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  177 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 276  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  277 tattccaatcaagtg 291  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  180 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 256  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  180 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 247  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  177 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 231  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  177 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 276  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  277 tattccaatcaagtg 291  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  177 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 238  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  194 atcacaatgtaaaacccattccaaacactcttcatgta 231  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
Q  47 ccattcaggtgccatataacctcttgtccctcttatt 83  Q
    |||||| |||||||||||||||||||| |||||||||    
T  23466619 ccattctggtgccatataacctcttgttcctcttatt 23466655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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