View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15944_low_9 (Length: 328)
Name: NF15944_low_9
Description: NF15944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15944_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 30955192 - 30955490
Alignment:
| Q |
15 |
gggtttgtatcatgcgttagagtggctaagtgacatgcaactggataatattgactttgaagtggattcaagaacaacgtagttggctttttacgcgcgt |
114 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955192 |
gggtttgtatgatgcgttagagtggttaagtgacacgcaactggataatattgactttgaagtggattcaagaacaacgtagttggctttttacgcgcgt |
30955291 |
T |
|
| Q |
115 |
aaagatgatgtttctaaattcaataatgtaattacatcatgtcgtggca-ttttttccacaaagtttacaaactctaggatgaagtttattcggagacaa |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
30955292 |
aaagatgatgtttctaaattcgataatgtaattacatcatgtcgtggcatttttttccacaaagttcacaaactctagggtgaagtttattcggagacaa |
30955391 |
T |
|
| Q |
214 |
acaaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttattatcaaatacccctttgtattgacaatcttactttt |
312 |
Q |
| |
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||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
30955392 |
gcaaacgaagtctctcatgttttagcacaagagaccacattagtatccagtcccaccatttattatcaagtagccctttgtattgacaatcttattttt |
30955490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 41075244 - 41075097
Alignment:
| Q |
24 |
tcatgcgttagagtggctaagtgacatgcaactggataatattgactttgaagtggattcaagaacaacgtagttggctttttacgcgcgtaaagatgat |
123 |
Q |
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|||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
41075244 |
tcatgcattagagtggttaagtgacatgcaattggataatattgactttgaagtggattcaaga--------gttggctttttacgcgcataaagatgat |
41075153 |
T |
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| Q |
124 |
gtttctaaattcaataatgtaattacatcatgtcgtggcattttttccacaaagtt |
179 |
Q |
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|||||||||||| ||||||||||||| ||||||| |||| ||| ||||||||||| |
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| T |
41075152 |
gtttctaaattcggtaatgtaattacagcatgtcgcggcactttctccacaaagtt |
41075097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 281
Target Start/End: Complemental strand, 18984878 - 18984695
Alignment:
| Q |
98 |
tggctttttacgcgcgtaaagatgatgtttctaaattcaataatgtaattacatcatgtcgtggcattttttccacaaagtttacaaactctaggatgaa |
197 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| | ||| ||| || |||| | ||||||| ||||||||||||||||| || ||||||||| || || | |
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| T |
18984878 |
tggctttttacgcgagtaaggatgatgtttctgagttcggtaacgttattaaaacatgtcgcggcattttttccacaaaattcacaaactctcgggtgga |
18984779 |
T |
|
| Q |
198 |
gtttattcggagacaaacaaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttattatca |
281 |
Q |
| |
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|||||||||||||||| || | || || |||||||| |||||| ||||||| | ||| || || ||||||| ||||||||||| |
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| T |
18984778 |
gtttattcggagacaagcagatgaggttgctcatgtcttggcaggagaggccgcgttattagctggtcccactatttattatca |
18984695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 2175313 - 2175016
Alignment:
| Q |
15 |
gggtttgtatcatgcgttagagtggctaagtgacatgcaactggataatattgactttgaagtggattcaagaacaacgtagttggctttttacgcgcgt |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |
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| T |
2175313 |
gggtttatatcatgcgttagagtggctatgggacatgcaactggataatattgactttgaagtggattccagaacaacacagttggcattttacgcgcgt |
2175214 |
T |
|
| Q |
115 |
aaagatgatgtttctaaattcaataatgtaattacatcatgtcgtggcattttttccacaaagtttacaaactctaggatgaagtttattcggagacaaa |
214 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||| ||||||| |||||||| ||||||||||| |||||||||||| || ||||||||| ||||||| |
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|
| T |
2175213 |
aaagatgatgtttctgaattcggtaatgtcattacagcatgtcgcggcattttatccacaaagttcacaaactctagggtggagtttattcagagacaag |
2175114 |
T |
|
| Q |
215 |
caaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttattatcaaatacccctttgtattgacaatcttactttt |
312 |
Q |
| |
|
|| | || || ||||||||||| | | |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
2175113 |
cagatgaggttgctcatgttttcgtaggagaggccacattagtagttagtcccaccatttattatcatgtacccctctgtattgacaatcttattttt |
2175016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 48770106 - 48770216
Alignment:
| Q |
178 |
tttacaaactctaggatgaagtttattcggagacaaacaaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttatt |
277 |
Q |
| |
|
||||| ||||||||| || ||||||||||| || || | || || || ||||||||| | ||| ||| ||||||||| | |||||||||||||||||| |
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| T |
48770106 |
tttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttatt |
48770205 |
T |
|
| Q |
278 |
atcaaataccc |
288 |
Q |
| |
|
||| |||||| |
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|
| T |
48770206 |
ttcatataccc |
48770216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 8150992 - 8150959
Alignment:
| Q |
198 |
gtttattcggagacaaacaaacgaagtcgctcat |
231 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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| T |
8150992 |
gtttattcggagacaagcaaacgaagtcgctcat |
8150959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 2112342 - 2112065
Alignment:
| Q |
15 |
gggtttgtatcatgcgttagagtggctaagtgacatgcaactggataatattgactttgaagtggattcaagaacaacgtagttggctttttacgcgcgt |
114 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2112342 |
gggtttatatcatgcattagagtggctaagtgacatgcaattggataatattgactttgaagtggattcaagaacaacacagttgactttttacgcgcgt |
2112243 |
T |
|
| Q |
115 |
aaagatgatgtttctaaattcaataatgtaattacatcatgtcgtggcattttttccacaaagtttacaaactctaggatgaagtttattcggagacaaa |
214 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| ||||||| |||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
2112242 |
aaagatgatgtttctgagttcggtaatgtaattacagcatgtcgcggcattttttcc-------------actatagggtgaagtttattcggagacaaa |
2112156 |
T |
|
| Q |
215 |
caaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttattatcaaatacccctttgtattgacaatct |
305 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||||||||||| | |||||| ||| ||| |||||||| |||| |||||||||| ||||| |
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|
| T |
2112155 |
caaatgaggtcgttcatgttttggcacaagaggccacattagcagctagtctcacgattgattatcaagtaccaatttgtattgagaatct |
2112065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 11553321 - 11553431
Alignment:
| Q |
178 |
tttacaaactctaggatgaagtttattcggagacaaacaaacgaagtcgctcatgttttggcacaagaggccacattagtatctagtcccaccatttatt |
277 |
Q |
| |
|
||||| ||||||||| || |||||| |||| ||||| | || || || | ||||||| | ||| ||| ||||||||| || |||||||||||||||||| |
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|
| T |
11553321 |
tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt |
11553420 |
T |
|
| Q |
278 |
atcaaataccc |
288 |
Q |
| |
|
||| |||||| |
|
|
| T |
11553421 |
ttcatataccc |
11553431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 10213820 - 10213853
Alignment:
| Q |
198 |
gtttattcggagacaaacaaacgaagtcgctcat |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
10213820 |
gtttattcggagacaaaccaacgaagtcgctcat |
10213853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 32282980 - 32282947
Alignment:
| Q |
198 |
gtttattcggagacaaacaaacgaagtcgctcat |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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|
| T |
32282980 |
gtttattcggagacaaaccaacgaagtcgctcat |
32282947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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